Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g02457 ATGGAGAATCAGCCTTCAAATGGAAGAAAAGCTATGGAAGAAGAGCTCAACAAAGGGCGTGACACAGCCAACCAGTTACTCCAAATACTTGTTCATAAATCCAACACTCGTCATTCAGATGCAGAAGTAGAAGGGTTAGTGTTGCCATTTGCAGAAGATCTCGCTCGTAAGGTACTGAGATCGTTCTCAAATACCCTTTTGCTTTTGAACACTCACACTGATGTTTCCGACGGTGTTGTTATGCCTGTCACCGTCAATGATGTCTCTTCGTCCCTCAAATGCCCTAATCTTGAGGATAAGGATGGGGTTTGCAAGGGTTCCATCAACGCTAAAAGACGAAGAGTGTCCCACAAAAGAAATGCACCAACATGGGAGAAGAACAGCTCTCACCTGATGGAAGATGGCTATATATGGAGAAAGTATGGACAGAAAATGACCATCAATGCAAAATACCTCAGGAGCTACTACAGATGCACTCACAAGTATGATCAGGGTTGTCCAGCAACCAAGCAGGTTCAAAGGGTTCAAGAGAACCCTCCATTGTACAGAACAACTTATTATGGTCATCACAATTGCAAAATTTCTTTAAGTCCAGAAATAATGTTGGAACCAGATTCTTCTTCTGACTCTTCTATGTTCCTTAGCTTCAGTACCACCTTCCCAGAAGAAAAATACCAGTTTTCATCATCAGTTTTTTCATCCACGAAACAGGAGCCTATGGAAGTGATTCCGGATGAATGTGGTATACACAACCAATTACCCTCTTCAGATTACAATCTGTTAAGTGACTATGAACTTGATTTCAATTGTTTGAGGCATGACACTATGCAGTCTATGCCATCCTCCACTGAATCTGTTCAATTTGATAAAGTTTATGGTAGTGGTATGGATTTTGATGGCTAG 903 0.4142 MENQPSNGRKAMEEELNKGRDTANQLLQILVHKSNTRHSDAEVEGLVLPFAEDLARKVLRSFSNTLLLLNTHTDVSDGVVMPVTVNDVSSSLKCPNLEDKDGVCKGSINAKRRRVSHKRNAPTWEKNSSHLMEDGYIWRKYGQKMTINAKYLRSYYRCTHKYDQGCPATKQVQRVQENPPLYRTTYYGHHNCKISLSPEIMLEPDSSSDSSMFLSFSTTFPEEKYQFSSSVFSSTKQEPMEVIPDECGIHNQLPSSDYNLLSDYELDFNCLRHDTMQSMPSSTESVQFDKVYGSGMDFDG 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g02457 300 Pfam WRKY DNA -binding domain 133 193 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun5g02457 300 SUPERFAMILY WRKY DNA-binding domain 128 194 IPR036576 GO:0003700|GO:0006355|GO:0043565
Viun5g02457 300 Gene3D WRKY domain 119 195 IPR036576 GO:0003700|GO:0006355|GO:0043565
Viun5g02457 300 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 16 213 IPR044810 GO:0003700
Viun5g02457 300 ProSiteProfiles WRKY domain profile. 127 195 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun5g02457 300 SMART WRKY_cls 132 194 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g02457 Viun-Chr5 34864587 34867084 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g02457 15 192 WRKY Transcription Factor Family AT3G56400 37.705 8.62e-30 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Viun5g02457 WRKY 7.2e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g02457 - - gmx:102663141 399.438