Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g02447 ATGCGGTTTGTGATGTCTTCAAGCTCCAAACATGTCGCCATCTTCTTCACTTTTTGCTTTCTGGCTTTGAATCACTTCCATCACTTTGGATCTAATGCTCAACTCATACCACAAGATGAAGTTAAAATACTACAAACAATATCAGACAAGGTAGAGAACTTGAATTGGAAAGTTACACAACGTTCCTGCAACAAAGGGGATAGAGGATTTGATAACAGAAAGATTTCAAGGGATGGGGATCAAATCATAAGGAATGTAACTTGTCATTGTTCTTTCAACAATGGTACTGTTTGCCATGTTATATCCATTGCACTCAAGGGTATCAATATATCTGGACCTTTACCCGATGAATTTGGAAATCTAACTCGACTGAAAATACTTGATCTCACTCGAAATTATTTCAATGGCTCAATTCCAAAAAGCCTTGGACGCCTTTCATCAGTTGAAGTTCTGTCACTTCTGGGAAATCGCTTTACTGGATCAATTCCTTCAGAAATTAGTGATATGACTAGTCTGCAAGAACTGAACTTGGAAGATAATCAACTTGAAGGGCATCTTCCCCCAAGCCTTGGAAAAATGAGCAACTTACAGAAATTACTTCTCTCTGCAAATAATTTCACAGGGACAATACCAGAAGCATATGGAAAACTAAAGAATCTTACTCAGTTGATAGATGGGAGCACTTTGTCTGGGAAGATACCCAGTTTTATTGGGAACTGGACCAAACTTGATAGACTGGATTTGCAGGGCACATCCTTGGAAGGTCCAATTCCTTCTGTCATATCTGAATTGATCTATTTGACAGAATTGAGAATATCAGATTTGAAGGGACCAACCATGACATTTCCTAATCTGACGAATTTGAATCTCTTGCAAAGACTAGAATTGAGAAATTGCTTAATCACTGGTCAAATTCCTAGTTACATTGGACAAAAGCAAAGTTTAAAAACTCTAGATCTGAGCTCCAACATGCTGACCGGTCCAATCCCAGATTCATTTCAGGACCTGGAAAAAATAAATTACTTGTTCCTGACTAACAATTCTCTAAGTGGACGAATTCCTAATTGGATACAAACCTTCAAACAGAGGATTGATTTATCTTTGAACAATTTTAGTGAGAGTTTTTCAAATGTTTGCCAGGTCTTGGATGTGAACTTAGCTTCCAGCCTCTCTCCCTCAGCAAACACTTCATCGTCTTGTTTAAAGAAAGGCCAACCTTGTTCTGGAAAACCCCGGTTTCATTCTCTGTTCATAAACTGTGGAGGACCTGAAATAGAGTTTGACGGCAATGAATATGAAGCCGACCCCAATCTAAGAGGCATATCAAACTATGTTGTTAGTAATGATGGCAAATGGGCATATAGCAGCACTGGAGTATATCTAGGAAGGGACAAGGCTGATTATGTTGCAAACAATCAGTTTAATCTGAAAATTAATGGCTCTGATTACTACCAAACAGCCCGCTTGGCCCCACTATATCTTCATTATTATGGTCTTTGTATGCTGAATGGCAATTATAAAGTGAAACTTCACTTTGCTGAGATAACATTCTCTGATGACAATGCATTTACCAGCCTTGGAAGGCGTGTATTTGATGTTTCAATCCAAGGTTTTAAATATTTGAAAGATTTTAACATTGTGGAAGAAGCTGGTGGAGTTGGTAAGGGAATCACTAAGGAGTTTAATGTGAATGTTACCCACAACACCTTGGAAATCCACTTTTCCTGGGCAGGGAAAGGAACTAATGCTATTCCTGAAAGAGGTATATATGGACCTCTTATATCTGCTATCACTGTGACCCCAAACTTCAAAGTTCCTTCACAAGGGCTGTCTACTGGAGCAATTGCTGGAATTGGGGTTGGGATATGTGTGTTCATCATATTGATACTCCTTGCACTTTGGAAGATGGGTTTTCTATGTGGGAAAGAGGAAACAGACCAAGAACTTCTAGGTTTGAAGACAGGTTATTTCAGTTTAAGACAGATTAAAGCTGCTACTGATAACTTTGATCCTGCAAATAAGATAGGTGAAGGAGGCTTTGGACCAGTATACAAGGGTGTGCTGTCAGACGGTGCTGTGATTGCTGTTAAACAGCTTTCCTCCAAATCAAAGCAAGGGAACCGCGAATTCATCAATGAAATAGGCATGATATCTGCTTTGCAGCATCCAAATCTTGTGAAACTCTATGGCTGTTGCATTGAAGGAAACCAGTTGCTTCTAGTATATGAATACATGGAGAATAATAGTCTTGCTCGTGCACTTTTTGGTAAAGAGCATGAGAGGATGCAATTGGACTGGCCCAGAAGAATGAAGATTTGTGTGGGGATTGCAAAGGGATTAGCCTATCTCCATGAGGAGTCAAGGTTGAAAATAGTACACAGGGATATTAAAGCAACCAATGTCTTACTTGATAAGCATCTGCATGCCAAGATCTCTGACTTTGGTTTAGCCAAACTTGATGAAGAAGAGAACACCCATATCAGTACAAGAATAGCTGGGACAATTGGCTACATGGCTCCAGAGTATGCTATGCGGGGTTACTTGACAGACAAAGCAGATGTCTATAGCTTTGGTATTGTAGCTTTAGAGATTGTTAGTGGAAAGAGCAACACAAATTACAGGCCAAAGGAGGAGTTTGTGTATCTTTTGGATTGGGCCTATGTTCTCCAAGAGCAAGGAAACCTTCTGGATTTGGTGGATCCAAGTCTTGGTTCAAAGTACTCCTCAGAAGAGGCAATGAGAATGCTGCAGTTAGCACTGTTGTGTACCAATCCTTCTCCCACTCTTAGACCACCTATGTCATCGGTAGTGAGCATGCTTCAGGGAAAAACTCCAATTCAAGCACCACCAATAATCAAAGGCAGTGACAATGCACAGGATGCAAGATTTAAAGCGTTGGAGTTCTTATCACAAGACAGCCAAACTCATGTCTCTTCTGATTTCTCACAAGATAGTATAGAGCAAAGAAGCAAGTCAATGGGGGGACCATGGGTTGATTCCACCATATCTATACCAAGTAGAACCGATCATTCTTCTGATAAACTTATTACAAGTTCAAATGACGAGTGCTTCGAAGTTGGGGCAGGGAACTCACCAAATTCAAATTCTTTTGTAAAGGATATGAACAAAAACTAG 3135 0.399 MRFVMSSSSKHVAIFFTFCFLALNHFHHFGSNAQLIPQDEVKILQTISDKVENLNWKVTQRSCNKGDRGFDNRKISRDGDQIIRNVTCHCSFNNGTVCHVISIALKGINISGPLPDEFGNLTRLKILDLTRNYFNGSIPKSLGRLSSVEVLSLLGNRFTGSIPSEISDMTSLQELNLEDNQLEGHLPPSLGKMSNLQKLLLSANNFTGTIPEAYGKLKNLTQLIDGSTLSGKIPSFIGNWTKLDRLDLQGTSLEGPIPSVISELIYLTELRISDLKGPTMTFPNLTNLNLLQRLELRNCLITGQIPSYIGQKQSLKTLDLSSNMLTGPIPDSFQDLEKINYLFLTNNSLSGRIPNWIQTFKQRIDLSLNNFSESFSNVCQVLDVNLASSLSPSANTSSSCLKKGQPCSGKPRFHSLFINCGGPEIEFDGNEYEADPNLRGISNYVVSNDGKWAYSSTGVYLGRDKADYVANNQFNLKINGSDYYQTARLAPLYLHYYGLCMLNGNYKVKLHFAEITFSDDNAFTSLGRRVFDVSIQGFKYLKDFNIVEEAGGVGKGITKEFNVNVTHNTLEIHFSWAGKGTNAIPERGIYGPLISAITVTPNFKVPSQGLSTGAIAGIGVGICVFIILILLALWKMGFLCGKEETDQELLGLKTGYFSLRQIKAATDNFDPANKIGEGGFGPVYKGVLSDGAVIAVKQLSSKSKQGNREFINEIGMISALQHPNLVKLYGCCIEGNQLLLVYEYMENNSLARALFGKEHERMQLDWPRRMKICVGIAKGLAYLHEESRLKIVHRDIKATNVLLDKHLHAKISDFGLAKLDEEENTHISTRIAGTIGYMAPEYAMRGYLTDKADVYSFGIVALEIVSGKSNTNYRPKEEFVYLLDWAYVLQEQGNLLDLVDPSLGSKYSSEEAMRMLQLALLCTNPSPTLRPPMSSVVSMLQGKTPIQAPPIIKGSDNAQDARFKALEFLSQDSQTHVSSDFSQDSIEQRSKSMGGPWVDSTISIPSRTDHSSDKLITSSNDECFEVGAGNSPNSNSFVKDMNKN 1044
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g02447 1044 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g53420 37 276 - -
Viun5g02447 1044 SMART serkin_6 669 938 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g02447 1044 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 413 602 - -
Viun5g02447 1044 Gene3D Transferase(Phosphotransferase) domain 1 745 949 - -
Viun5g02447 1044 Gene3D Ribonuclease Inhibitor 85 223 IPR032675 -
Viun5g02447 1044 Gene3D Ribonuclease Inhibitor 224 403 IPR032675 -
Viun5g02447 1044 CDD STKc_IRAK 675 942 - -
Viun5g02447 1044 Gene3D - 415 602 - -
Viun5g02447 1044 FunFam Putative LRR receptor-like serine/threonine-protein kinase 745 951 - -
Viun5g02447 1044 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 16 973 - -
Viun5g02447 1044 MobiDBLite consensus disorder prediction 977 1044 - -
Viun5g02447 1044 Pfam Malectin domain 416 597 IPR021720 -
Viun5g02447 1044 Gene3D Phosphorylase Kinase; domain 1 639 744 - -
Viun5g02447 1044 Pfam Leucine rich repeat 291 349 IPR001611 GO:0005515
Viun5g02447 1044 Pfam Leucine rich repeat 123 182 IPR001611 GO:0005515
Viun5g02447 1044 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 640 744 - -
Viun5g02447 1044 SUPERFAMILY Protein kinase-like (PK-like) 653 940 IPR011009 -
Viun5g02447 1044 ProSitePatterns Serine/Threonine protein kinases active-site signature. 791 803 IPR008271 GO:0004672|GO:0006468
Viun5g02447 1044 SUPERFAMILY L domain-like 90 382 - -
Viun5g02447 1044 Pfam Protein tyrosine and serine/threonine kinase 673 938 IPR001245 GO:0004672|GO:0006468
Viun5g02447 1044 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 283 375 - -
Viun5g02447 1044 ProSiteProfiles Protein kinase domain profile. 669 952 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g02447 Viun-Chr5 34490115 34499736 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g02447 29 1007 Receptor kinase-like Gene Family AT1G53440 60.887 0.0 1184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Viun5g02447 PK_Tyr_Ser-Thr 3.2e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g02447 - - gmx:121173337 1670.6