Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g02446 ATGCGGTTTGTGATGTCTTCAAGCTCCAAACATGTCGCCATCTTCTTCACTTTTTGCTTTCTGGCTTTGAATCACTTCCATCACTTTGGATCTAATGCTCAACTCATACCACAAGATGAAGTTAAAATACTACAAACAATATCAGACAAGGTAGAGAACTTGAATTGGAAAGTTACACAACGTTCCTGCAACAAAGGGGATAGAGGATTTGATAACAGAAAGATTTCAAGGGATGGGGATCAAATCATAAGGAATGTAACTTGTCATTGTTCTTTCAACAATGGTACTGTTTGCCATGTTATATCCATTGCACTCAAGGGTATCAATATATCTGGACCTTTACCCGATGAATTTGGAAATCTAACTCGACTGAAAATACTTGATCTCACTCGAAATTATTTCAATGGCTCAATTCCAAAAAGCCTTGGACGCCTTTCATCAGTTGAAGTTCTGTCACTTCTGGGAAATCGCTTTACTGGATCAATTCCTTCAGAAATTAGTGATATGACTAGTCTGCAAGAACTGAACTTGGAAGATAATCAACTTGAAGGGCATCTTCCCCCAAGCCTTGGAAAAATGAGCAACTTACAGAAATTACTTCTCTCTGCAAATAATTTCACAGGGACAATACCAGAAGCATATGGAAAACTAAAGAATCTTACTCAGTTTAGGATAGATGGGAGCACTTTGTCTGGGAAGATACCCAGTTTTATTGGGAACTGGACCAAACTTGATAGACTGGATTTGCAGGGCACATCCTTGGAAGGTCCAATTCCTTCTGTCATATCTGAATTGATCTATTTGACAGAATTGAGAATATCAGATTTGAAGGGACCAACCATGACATTTCCTAATCTGACGAATTTGAATCTCTTGCAAAGACTAGAATTGAGAAATTGCTTAATCACTGGTCAAATTCCTAGTTACATTGGACAAAAGCAAAGTTTAAAAACTCTAGATCTGAGCTCCAACATGCTGACCGGTCCAATCCCAGATTCATTTCAGGACCTGGAAAAAATAAATTACTTGTTCCTGACTAACAATTCTCTAAGTGGACGAATTCCTAATTGGATACAAACCTTCAAACAGAGGATTGATTTATCTTTGAACAATTTTAGTGAGAGTTTTTCAAATGTTTGCCAGGTCTTGGATGTGAACTTAGCTTCCAGCCTCTCTCCCTCAGCAAACACTTCATCGTCTTGTTTAAAGAAAGGCCAACCTTGTTCTGGAAAACCCCGGTTTCATTCTCTGTTCATAAACTGTGGAGGACCTGAAATAGAGTTTGACGGCAATGAATATGAAGCCGACCCCAATCTAAGAGGCATATCAAACTATGTTGTTAGTAATGATGGCAAATGGGCATATAGCAGCACTGGAGTATATCTAGGAAGGGACAAGGCTGATTATGTTGCAAACAATCAGTTTAATCTGAAAATTAATGGCTCTGATTACTACCAAACAGCCCGCTTGGCCCCACTATATCTTCATTATTATGGTCTTTGTATGCTGAATGGCAATTATAAAGTGAAACTTCACTTTGCTGAGATAACATTCTCTGATGACAATGCATTTACCAGCCTTGGAAGGCGTGTATTTGATGTTTCAATCCAAGGTTTTAAATATTTGAAAGATTTTAACATTGTGGAAGAAGCTGGTGGAGTTGGTAAGGGAATCACTAAGGAGTTTAATGTGAATGTTACCCACAACACCTTGGAAATCCACTTTTCCTGGGCAGGGAAAGGAACTAATGCTATTCCTGAAAGAGGTATATATGGACCTCTTATATCTGCTATCACTGTGACCCCAAACTTCAAAGTTCCTTCACAAGGGCTGTCTACTGGAGCAATTGCTGGAATTGGGGTTGGGATATGTGTGTTCATCATATTGATACTCCTTGCACTTTGGAAGATGGGTTTTCTATGTGGGAAAGAGGAAACAGACCAAGAACTTCTAGGTTTGAAGACAGGTTATTTCAGTTTAAGACAGATTAAAGCTGCTACTGATAACTTTGATCCTGCAAATAAGATAGGTGAAGGAGGCTTTGGACCAGTATACAAGGGTGTGCTGTCAGACGGTGCTGTGATTGCTGTTAAACAGCTTTCCTCCAAATCAAAGCAAGGGAACCGCGAATTCATCAATGAAATAGGCATGATATCTGCTTTGCAGCATCCAAATCTTGTGAAACTCTATGGCTGTTGCATTGAAGGAAACCAGTTGCTTCTAGTATATGAATACATGGAGAATAATAGTCTTGCTCGTGCACTTTTTGGTAAAGAGCATGAGAGGATGCAATTGGACTGGCCCAGAAGAATGAAGATTTGTGTGGGGATTGCAAAGGGATTAGCCTATCTCCATGAGGAGTCAAGGTTGAAAATAGTACACAGGGATATTAAAGCAACCAATGTCTTACTTGATAAGCATCTGCATGCCAAGATCTCTGACTTTGGTTTAGCCAAACTTGATGAAGAAGAGAACACCCATATCAGTACAAGAATAGCTGGGACAATTGGCTACATGGCTCCAGAGTATGCTATGCGGGGTTACTTGACAGACAAAGCAGATGTCTATAGCTTTGGTATTGTAGCTTTAGAGATTGTTAGTGGAAAGAGCAACACAAATTACAGGCCAAAGGAGGAGTTTGTGTATCTTTTGGATTGGGCCTATGTTCTCCAAGAGCAAGGAAACCTTCTGGATTTGGTGGATCCAAGTCTTGGTTCAAAGTACTCCTCAGAAGAGGCAATGAGAATGCTGCAGTTAGCACTGTTGTGTACCAATCCTTCTCCCACTCTTAGACCACCTATGTCATCGGTAGTGAGCATGCTTCAGGGAAAAACTCCAATTCAAGCACCACCAATAATCAAAGGCAGTGACAATGCACAGGATGCAAGATTTAAAGCGTTGGAGTTCTTATCACAAGACAGCCAAACTCATGTCTCTTCTGATTTCTCACAAGATAGTATAGAGCAAAGAAGCAAGTCAATGGGGGGACCATGGGTTGATTCCACCATATCTATACCAAGTAGAACCGATCATTCTTCTGATAAACTTATTACAAGTTCAAATGACGAGTGCTTCGAAGTTGGGGCAGGGAACTCACCAAATTCAAATTCTTTTGTAAAGGATATGAACAAAAACTAG 3138 0.399 MRFVMSSSSKHVAIFFTFCFLALNHFHHFGSNAQLIPQDEVKILQTISDKVENLNWKVTQRSCNKGDRGFDNRKISRDGDQIIRNVTCHCSFNNGTVCHVISIALKGINISGPLPDEFGNLTRLKILDLTRNYFNGSIPKSLGRLSSVEVLSLLGNRFTGSIPSEISDMTSLQELNLEDNQLEGHLPPSLGKMSNLQKLLLSANNFTGTIPEAYGKLKNLTQFRIDGSTLSGKIPSFIGNWTKLDRLDLQGTSLEGPIPSVISELIYLTELRISDLKGPTMTFPNLTNLNLLQRLELRNCLITGQIPSYIGQKQSLKTLDLSSNMLTGPIPDSFQDLEKINYLFLTNNSLSGRIPNWIQTFKQRIDLSLNNFSESFSNVCQVLDVNLASSLSPSANTSSSCLKKGQPCSGKPRFHSLFINCGGPEIEFDGNEYEADPNLRGISNYVVSNDGKWAYSSTGVYLGRDKADYVANNQFNLKINGSDYYQTARLAPLYLHYYGLCMLNGNYKVKLHFAEITFSDDNAFTSLGRRVFDVSIQGFKYLKDFNIVEEAGGVGKGITKEFNVNVTHNTLEIHFSWAGKGTNAIPERGIYGPLISAITVTPNFKVPSQGLSTGAIAGIGVGICVFIILILLALWKMGFLCGKEETDQELLGLKTGYFSLRQIKAATDNFDPANKIGEGGFGPVYKGVLSDGAVIAVKQLSSKSKQGNREFINEIGMISALQHPNLVKLYGCCIEGNQLLLVYEYMENNSLARALFGKEHERMQLDWPRRMKICVGIAKGLAYLHEESRLKIVHRDIKATNVLLDKHLHAKISDFGLAKLDEEENTHISTRIAGTIGYMAPEYAMRGYLTDKADVYSFGIVALEIVSGKSNTNYRPKEEFVYLLDWAYVLQEQGNLLDLVDPSLGSKYSSEEAMRMLQLALLCTNPSPTLRPPMSSVVSMLQGKTPIQAPPIIKGSDNAQDARFKALEFLSQDSQTHVSSDFSQDSIEQRSKSMGGPWVDSTISIPSRTDHSSDKLITSSNDECFEVGAGNSPNSNSFVKDMNKN 1045
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g02446 1045 FunFam Putative LRR receptor-like serine/threonine-protein kinase 746 952 - -
Viun5g02446 1045 CDD STKc_IRAK 676 943 - -
Viun5g02446 1045 Gene3D Ribonuclease Inhibitor 276 401 IPR032675 -
Viun5g02446 1045 Gene3D Transferase(Phosphotransferase) domain 1 746 950 - -
Viun5g02446 1045 MobiDBLite consensus disorder prediction 978 1045 - -
Viun5g02446 1045 Pfam Protein tyrosine and serine/threonine kinase 674 939 IPR001245 GO:0004672|GO:0006468
Viun5g02446 1045 Gene3D Phosphorylase Kinase; domain 1 640 745 - -
Viun5g02446 1045 SMART serkin_6 670 939 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g02446 1045 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 641 745 - -
Viun5g02446 1045 ProSitePatterns Serine/Threonine protein kinases active-site signature. 792 804 IPR008271 GO:0004672|GO:0006468
Viun5g02446 1045 ProSiteProfiles Protein kinase domain profile. 670 953 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g02446 1045 Pfam Malectin domain 417 598 IPR021720 -
Viun5g02446 1045 Gene3D - 416 603 - -
Viun5g02446 1045 Gene3D Ribonuclease Inhibitor 87 275 IPR032675 -
Viun5g02446 1045 SUPERFAMILY L domain-like 96 360 - -
Viun5g02446 1045 SUPERFAMILY Protein kinase-like (PK-like) 654 941 IPR011009 -
Viun5g02446 1045 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 284 376 - -
Viun5g02446 1045 Pfam Leucine rich repeat 292 350 IPR001611 GO:0005515
Viun5g02446 1045 Pfam Leucine rich repeat 123 182 IPR001611 GO:0005515
Viun5g02446 1045 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 414 603 - -
Viun5g02446 1045 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g53420 37 277 - -
Viun5g02446 1045 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 16 974 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g02446 Viun-Chr5 34490115 34499736 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g02446 29 1008 Receptor kinase-like Gene Family AT1G53440 61.089 0.0 1194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Viun5g02446 PK_Tyr_Ser-Thr 3.3e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g02446 - - gmx:121173337 1679.46