Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g02442 ATGAGTAACCCTTCTTTCTTCTTCTTCTTCTTCTTCATTGCTTCCTTTTTCTTTGCCTCTTTTGCTTTTGCTTCTGGAGCCACTCTGCCTCAGGATGAAGTGGAAGCTCTGAAAGATATAGGTAAGAGACTTGGGAAGAAGTGGGATTTCAGCGTAGATCCATGCAGTGGAGAAAGAAATTGGTCAGGAAATGATAATAATATCACATGGGCCTATGACATTCACAATGGAACCGTCTGCCATGTCACCCGAATATTTTTGAAATCACAAAGTCTTCCGGGTATGCTCCCGCAGAATCTATTCAAGTTGCCTTATCTTCAAGAAATTGACCTCTCTCGCAACTATCTGAATGGCACAATTCCTAAAGAATGGGGCTCAACGAAACTTGTCACCATTGCCCTCCTTGGAAATCGATTGACAGGTTCAATACCAATCGAGATAACAAATATATCCACTCTTGAAGATTTGAACTTGGAAGCCAATCAATTGTCTGAAAGCCTTCCTCCTGAGCTTGCTAATTTAACCCAAATTCGAAGATTGGTACTTTCCTCCAATAATTTTACTGGAGAACTTCCGGTTGCATTGGGCAAACTCTCTGAATTGAAAGATTTTCGAATAGGGGACAATCAATTTTCTGGGAAGATACCTGACTTCATTCAAAATCTGAGAAATCTAGAGATATTGAGGATTGAAGGGAGTGGATTAAGTGGACCAATTCCTTCTGGAATTTCAGATCTGCAAAACTTAATTGACTTGATAATTAGTGATCTAAGAGGATCTGAAACTTCAACTTTTCCTCTACTTGATAAAATGAACTTGGAGAAGTTGATTCTGAGAAATTGTAACATCATTGGAGATTTACCCGAATATCTTGGGAAAATCGCAAGTTTAGATGACAACTTAGACCTCAGCTTTAACAAGTTGACTGGACCAATTCCAAATACCTATGCTGCCCTAGCAACAAAAGTGACGAACATATATTTAACTGGAAATCTTCTAAATGGACCACTGCCTTCATGGACAGAGAAAGCCAAGTCAATAGATGTTTCATATAACAACTTAACTATCACAGGCCAACAGAGTACAACTTGTAACCAAAAAAATAGGAACTTATTTGCTAATTCCATCACGAATGGCTTAGGAGAAGATGCTTGTTTGGAAGGTCATACATGTTCCAAAATGTTATACAATCTTCGTATAAATTGTGGTGGAAATGCGGTAACAGTCAATGGAAACACATATGATGATGATGTAGATGATGGAGATGCAACTAGATTTCTTTGGAATAGAGGGAGAAATTGGGCAGTTAGCACTACTGGTAACTTTATGAATAATAATAATTATCATGCAGGAAAGTATCTAGTCTCAAAAACATATGGGCTTTCTACGAAGAATGTTGACATGTACACGACTGCACGAGCTTCTCCCATTTCATTGACTTATTATGGATTTTGCTTGCAAAATGGAAACTATACAATATTTTTGCATTTTGCTGAAATTGTGTTCACTGATGATCAAACGTTTAACAACTTAGGAAGACGAGTATTTGACATCTACATTCAGGGAAAACTAGTGAAAGAAAGCTTCAATATTGCAGAAGAAGCAGGAGGTAATGGTAAGCCAATCATAAAAAAATTTACTACTGTTGTGAGTAATAATACCTTGAATATACGCTTGAATTGGGCTGGAAAAGGGACAATTGCACTCCCATTTGGATCAGTATATGGTCCTCTTATATCAGCTATAACTGTGAACTCAGACAATCCACCTGGAAGTAGCATATCAGTAGGCATTGTGGTTGGAATTGTGGTTGCATTGGTAGTTATTATCATCCTTTTGGTTGGTATACTTTGGTGGAAATGCTGCTTAAGAAAGAAAAGCTCCTTAGAAAGAGAGTTAAAAGGTTTAGAATTACGAACAAGTGTATTCACTTTAAGACAAATAAAATTGGCAACAAACAACTTTGATGAGGAGAATAAGATTGGAGAAGGAGGATTTGGTCCTGTGTACAAGGGATGTCTATCTGATGGGACACTAATAGCAGTAAAACTACTCTCTTCTAAATCAAGACAAGGGAATCGAGAGTTCTTAAATGAGATAGGAATGATTTCAGCTTTGCAACATCCTTATCTTGTTAAATTATATGGATGTTGTGTAGAGGGAAATCACCTATTGTTGGTATATGAGTATATGGAAAACAATAACCTTGCTCGTGCTTTATTTGGCCCAGAAGAACTCCAGATAAAATTGGATTGGCCAACAAGATACAAGATTTGTGTTGGTATTGCTAGAGGTTTAGCTTACCTCCATGAAGAATCAAGATTGAAGGTTGTTCACAGGGACATTAAGGCCACTAATGTATTGCTTGATAAAGATCTCAACCCAAAGATATCAGACTTTGGTTTGGCCAAACTTGACGAGGAAGAAAATACTCATATTAGCACTCGAATAGCTGGGACATATGGATATATGGCTCCAGAATATGCCATGCATGGTTATTTGACTGATAAAGCAGATGTCTATAGTTTTGGAATTGTTGTCTTGGAAATTATAAATGGAAGGAACAATACCATTCATCGACAAAAAGAAGAATCGTTCTCAATTCTTGATTGGGCACATATGTTGAAAGAGAAATGTGATCTAATGGAGCTAGTGGATAGAAGATTGGGTTCAGACTTTAACAAAGAAGAGGTATTGGTGATGATAAAAGTGGCTCTATTATGCACTCAAGTGACTACAACACTGAGGCCAACAATGTCATCAGTAGTAAGCATATTGGAAGGAAAAAGTGTTGCTGAGGAAGTGGTTACAGAAGCAAGTGAGCTATTGGATGAGAAAAAGATGGATGCAATGAGAACATTTTACAATCAGCTACATATAGAAGTGCCATGGACTGCTTCATCTACATCTGCGTCAGATCTCTATCCCACACATCTTGATTCATCTTTTTTGGACAAGAGAAATCATCTCTAA 2973 0.3747 MSNPSFFFFFFFIASFFFASFAFASGATLPQDEVEALKDIGKRLGKKWDFSVDPCSGERNWSGNDNNITWAYDIHNGTVCHVTRIFLKSQSLPGMLPQNLFKLPYLQEIDLSRNYLNGTIPKEWGSTKLVTIALLGNRLTGSIPIEITNISTLEDLNLEANQLSESLPPELANLTQIRRLVLSSNNFTGELPVALGKLSELKDFRIGDNQFSGKIPDFIQNLRNLEILRIEGSGLSGPIPSGISDLQNLIDLIISDLRGSETSTFPLLDKMNLEKLILRNCNIIGDLPEYLGKIASLDDNLDLSFNKLTGPIPNTYAALATKVTNIYLTGNLLNGPLPSWTEKAKSIDVSYNNLTITGQQSTTCNQKNRNLFANSITNGLGEDACLEGHTCSKMLYNLRINCGGNAVTVNGNTYDDDVDDGDATRFLWNRGRNWAVSTTGNFMNNNNYHAGKYLVSKTYGLSTKNVDMYTTARASPISLTYYGFCLQNGNYTIFLHFAEIVFTDDQTFNNLGRRVFDIYIQGKLVKESFNIAEEAGGNGKPIIKKFTTVVSNNTLNIRLNWAGKGTIALPFGSVYGPLISAITVNSDNPPGSSISVGIVVGIVVALVVIIILLVGILWWKCCLRKKSSLERELKGLELRTSVFTLRQIKLATNNFDEENKIGEGGFGPVYKGCLSDGTLIAVKLLSSKSRQGNREFLNEIGMISALQHPYLVKLYGCCVEGNHLLLVYEYMENNNLARALFGPEELQIKLDWPTRYKICVGIARGLAYLHEESRLKVVHRDIKATNVLLDKDLNPKISDFGLAKLDEEENTHISTRIAGTYGYMAPEYAMHGYLTDKADVYSFGIVVLEIINGRNNTIHRQKEESFSILDWAHMLKEKCDLMELVDRRLGSDFNKEEVLVMIKVALLCTQVTTTLRPTMSSVVSILEGKSVAEEVVTEASELLDEKKMDAMRTFYNQLHIEVPWTASSTSASDLYPTHLDSSFLDKRNHL 990
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g02442 990 Gene3D Ribonuclease Inhibitor 150 219 IPR032675 -
Viun5g02442 990 Gene3D Ribonuclease Inhibitor 35 149 IPR032675 -
Viun5g02442 990 Pfam Malectin domain 397 582 IPR021720 -
Viun5g02442 990 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 395 587 - -
Viun5g02442 990 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 13 965 - -
Viun5g02442 990 SUPERFAMILY L domain-like 271 357 - -
Viun5g02442 990 ProSitePatterns Serine/Threonine protein kinases active-site signature. 777 789 IPR008271 GO:0004672|GO:0006468
Viun5g02442 990 Gene3D - 395 588 - -
Viun5g02442 990 Coils Coil 987 990 - -
Viun5g02442 990 SUPERFAMILY L domain-like 54 297 - -
Viun5g02442 990 ProSiteProfiles Protein kinase domain profile. 655 936 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g02442 990 FunFam Putative LRR receptor-like serine/threonine-protein kinase 731 938 - -
Viun5g02442 990 Gene3D Transferase(Phosphotransferase) domain 1 731 943 - -
Viun5g02442 990 SMART serkin_6 655 900 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g02442 990 Pfam Protein kinase domain 656 922 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g02442 990 Gene3D Phosphorylase Kinase; domain 1 619 730 - -
Viun5g02442 990 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 624 730 - -
Viun5g02442 990 Gene3D Ribonuclease Inhibitor 220 380 IPR032675 -
Viun5g02442 990 CDD STKc_IRAK 661 928 - -
Viun5g02442 990 SUPERFAMILY Protein kinase-like (PK-like) 639 931 IPR011009 -
Viun5g02442 990 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 35 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g02442 Viun-Chr5 34379086 34417046 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g02442 23 982 Receptor kinase-like Gene Family AT1G53420 54.583 0.0 970
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Viun5g02442 Pkinase 1.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g02442 - - gmx:732563 1321.22