LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun5g02441	ATGAGTAACCCTTCTTTCTTCTTCTTCTTCTTCTTCATTGCTTCCTTTTTCTTTGCCTCTTTTGCTTTTGCTTCTGGAGCCACTCTGCCTCAGGATGAAGTGGAAGCTCTGAAAGATATAGGTAAGAGACTTGGGAAGAAGTGGGATTTCAGCGTAGATCCATGCAGTGGAGAAAGAAATTGGTCAGGAAATGATAATAATATCACATGGGCCTATGACATTCACAATGGAACCGTCTGCCATGTCACCCGAATATTTTTGAAATCACAAAGTCTTCCGGGTATGCTCCCGCAGAATCTATTCAAGTTGCCTTATCTTCAAGAAATTGACCTCTCTCGCAACTATCTGAATGGCACAATTCCTAAAGAATGGGGCTCAACGAAACTTGTCACCATTGCCCTCCTTGGAAATCGATTGACAGGTTCAATACCAATCGAGATAACAAATATATCCACTCTTGAAGATTTGAACTTGGAAGCCAATCAATTGTCTGAAAGCCTTCCTCCTGAGCTTGCTAATTTAACCCAAATTCGAAGATTGGTACTTTCCTCCAATAATTTTACTGGAGAACTTCCGGTTGCATTGGGCAAACTCTCTGAATTGAAAGATTTTCGAATAGGGGACAATCAATTTTCTGGGAAGATACCTGACTTCATTCAAAATCTGAGAAATCTAGAGATATTGAGGATTGAAGGGAGTGGATTAAGTGGACCAATTCCTTCTGGAATTTCAGATCTGCAAAACTTAATTGACTTGATAATTAGTGATCTAAGAGGATCTGAAACTTCAACTTTTCCTCTACTTGATAAAATGAACTTGGAGAAGTTGATTCTGAGAAATTGTAACATCATTGGAGATTTACCCGAATATCTTGGGAAAATCGCAAGTTTAGATGACAACTTAGACCTCAGCTTTAACAAGTTGACTGGACCAATTCCAAATACCTATGCTGCCCTAGCAACAAAAGTGACGAACATATATTTAACTGGAAATCTTCTAAATGGACCACTGCCTTCATGGACAGAGAAAGCCAAGTCAATGAACTTATTTGCTAATTCCATCACGAATGGCTTAGGAGAAGATGCTTGTTTGGAAGGTCATACATGTTCCAAAATGTTATACAATCTTCGTATAAATTGTGGTGGAAATGCGGTAACAGTCAATGGAAACACATATGATGATGATGTAGATGATGGAGATGCAACTAGATTTCTTTGGAATAGAGGGAGAAATTGGGCAGTTAGCACTACTGGTAACTTTATGAATAATAATAATTATCATGCAGGAAAGTATCTAGTCTCAAAAACATATGGGCTTTCTACGAAGAATGTTGACATGTACACGACTGCACGAGCTTCTCCCATTTCATTGACTTATTATGGATTTTGCTTGCAAAATGGAAACTATACAATATTTTTGCATTTTGCTGAAATTGTGTTCACTGATGATCAAACGTTTAACAACTTAGGAAGACGAGTATTTGACATCTACATTCAGGGAAAACTAGTGAAAGAAAGCTTCAATATTGCAGAAGAAGCAGGAGGTAATGGTAAGCCAATCATAAAAAAATTTACTACTGTTGTGAGTAATAATACCTTGAATATACGCTTGAATTGGGCTGGAAAAGGGACAATTGCACTCCCATTTGGATCAGTATATGGTCCTCTTATATCAGCTATAACTGTGAACTCAGACAATCCACCTGGAAGTAGCATATCAGTAGGCATTGTGGTTGGAATTGTGGTTGCATTGGTAGTTATTATCATCCTTTTGGTTGGTATACTTTGGTGGAAATGCTGCTTAAGAAAGAAAAGCTCCTTAGAAAGAGAGTTAAAAGGTTTAGAATTACGAACAAGTGTATTCACTTTAAGACAAATAAAATTGGCAACAAACAACTTTGATGAGGAGAATAAGATTGGAGAAGGAGGATTTGGTCCTGTGTACAAGGGATGTCTATCTGATGGGACACTAATAGCAGTAAAACTACTCTCTTCTAAATCAAGACAAGGGAATCGAGAGTTCTTAAATGAGATAGGAATGATTTCAGCTTTGCAACATCCTTATCTTGTTAAATTATATGGATGTTGTGTAGAGGGAAATCACCTATTGTTGGTATATGAGTATATGGAAAACAATAACCTTGCTCGTGCTTTATTTGGCCCAGAAGAACTCCAGATAAAATTGGATTGGCCAACAAGATACAAGATTTGTGTTGGTATTGCTAGAGGTTTAGCTTACCTCCATGAAGAATCAAGATTGAAGGTTGTTCACAGGGACATTAAGGCCACTAATGTATTGCTTGATAAAGATCTCAACCCAAAGATATCAGACTTTGGTTTGGCCAAACTTGACGAGGAAGAAAATACTCATATTAGCACTCGAATAGCTGGGACATATGGATATATGGCTCCAGAATATGCCATGCATGGTTATTTGACTGATAAAGCAGATGTCTATAGTTTTGGAATTGTTGTCTTGGAAATTATAAATGGAAGGAACAATACCATTCATCGACAAAAAGAAGAATCGTTCTCAATTCTTGATTGGGCACATATGTTGAAAGAGAAATGTGATCTAATGGAGCTAGTGGATAGAAGATTGGGTTCAGACTTTAACAAAGAAGAGGTATTGGTGATGATAAAAGTGGCTCTATTATGCACTCAAGTGACTACAACACTGAGGCCAACAATGTCATCAGTAGTAAGCATATTGGAAGGAAAAAGTGTTGCTGAGGAAGTGGTTACAGAAGCAAGTGAGCTATTGGATGAGAAAAAGATGGATGCAATGAGAACATTTTACAATCAGCTACATATAGAAGTGCCATGGACTGCTTCATCTACATCTGCGTCAGATCTCTATCCCACACATCTTGATTCATCTTTTTTGGACAAGAGAAATCATCTCTAA	2907	0.376	MSNPSFFFFFFFIASFFFASFAFASGATLPQDEVEALKDIGKRLGKKWDFSVDPCSGERNWSGNDNNITWAYDIHNGTVCHVTRIFLKSQSLPGMLPQNLFKLPYLQEIDLSRNYLNGTIPKEWGSTKLVTIALLGNRLTGSIPIEITNISTLEDLNLEANQLSESLPPELANLTQIRRLVLSSNNFTGELPVALGKLSELKDFRIGDNQFSGKIPDFIQNLRNLEILRIEGSGLSGPIPSGISDLQNLIDLIISDLRGSETSTFPLLDKMNLEKLILRNCNIIGDLPEYLGKIASLDDNLDLSFNKLTGPIPNTYAALATKVTNIYLTGNLLNGPLPSWTEKAKSMNLFANSITNGLGEDACLEGHTCSKMLYNLRINCGGNAVTVNGNTYDDDVDDGDATRFLWNRGRNWAVSTTGNFMNNNNYHAGKYLVSKTYGLSTKNVDMYTTARASPISLTYYGFCLQNGNYTIFLHFAEIVFTDDQTFNNLGRRVFDIYIQGKLVKESFNIAEEAGGNGKPIIKKFTTVVSNNTLNIRLNWAGKGTIALPFGSVYGPLISAITVNSDNPPGSSISVGIVVGIVVALVVIIILLVGILWWKCCLRKKSSLERELKGLELRTSVFTLRQIKLATNNFDEENKIGEGGFGPVYKGCLSDGTLIAVKLLSSKSRQGNREFLNEIGMISALQHPYLVKLYGCCVEGNHLLLVYEYMENNNLARALFGPEELQIKLDWPTRYKICVGIARGLAYLHEESRLKVVHRDIKATNVLLDKDLNPKISDFGLAKLDEEENTHISTRIAGTYGYMAPEYAMHGYLTDKADVYSFGIVVLEIINGRNNTIHRQKEESFSILDWAHMLKEKCDLMELVDRRLGSDFNKEEVLVMIKVALLCTQVTTTLRPTMSSVVSILEGKSVAEEVVTEASELLDEKKMDAMRTFYNQLHIEVPWTASSTSASDLYPTHLDSSFLDKRNHL	968

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun5g02441	968	FunFam	Probable LRR receptor-like serine/threonine-protein kinase RFK1	35	191	-	-
	Viun5g02441	968	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	755	767	IPR008271	GO:0004672\|GO:0006468
	Viun5g02441	968	Gene3D	Ribonuclease Inhibitor	30	252	IPR032675	-
	Viun5g02441	968	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED	13	943	-	-
	Viun5g02441	968	FunFam	Putative LRR receptor-like serine/threonine-protein kinase	709	916	-	-
	Viun5g02441	968	SUPERFAMILY	L domain-like	54	338	-	-
	Viun5g02441	968	Gene3D	Phosphorylase Kinase; domain 1	597	708	-	-
	Viun5g02441	968	Pfam	Protein kinase domain	634	900	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun5g02441	968	FunFam	probable LRR receptor-like serine/threonine-protein kinase At1g53430	602	708	-	-
	Viun5g02441	968	Pfam	Malectin domain	375	560	IPR021720	-
	Viun5g02441	968	CDD	STKc_IRAK	639	906	-	-
	Viun5g02441	968	Gene3D	-	373	566	-	-
	Viun5g02441	968	Gene3D	Transferase(Phosphotransferase) domain 1	709	921	-	-
	Viun5g02441	968	SUPERFAMILY	Protein kinase-like (PK-like)	617	909	IPR011009	-
	Viun5g02441	968	Gene3D	Ribonuclease Inhibitor	253	364	IPR032675	-
	Viun5g02441	968	ProSiteProfiles	Protein kinase domain profile.	633	914	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun5g02441	968	FunFam	Putative leucine-rich repeat receptor-like serine/threonine-protein kinase	373	565	-	-
	Viun5g02441	968	SMART	serkin_6	633	878	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun5g02441	Viun-Chr5	34379086	34417046	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun5g02441	23	960	Receptor kinase-like Gene Family	AT1G53420	54.859	0.0	959

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Viun5g02441		Pkinase	1.6e-47	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun5g02441	-		-	gmx:732563	1291.17