LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun5g02440	ATGAGTAACCCTTCTTTCTTCTTCTTCTTCTTCTTCATTGCTTCCTTTTTCTTTGCCTCTTTTGCTTTTGCTTCTGGAGCCACTCTGCCTCAGGATGAAGTGGAAGCTCTGAAAGATATAGGTAAGAGACTTGGGAAGAAGTGGGATTTCAGCGTAGATCCATGCAGTGGAGAAAGAAATTGGTCAGGAAATGATAATAATATCACATGGGCCTATGACATTCACAATGGAACCGTCTGCCATGTCACCCGAATATTTTTGAAATCACAAAGTCTTCCGGGTATGCTCCCGCAGAATCTATTCAAGTTGCCTTATCTTCAAGAAATTGACCTCTCTCGCAACTATCTGAATGGCACAATTCCTAAAGAATGGGGCTCAACGAAACTTGTCACCATTGCCCTCCTTGGAAATCGATTGACAGGTTCAATACCAATCGAGATAACAAATATATCCACTCTTGAAGATTTGAACTTGGAAGCCAATCAATTGTCTGAAAGCCTTCCTCCTGAGCTTGCTAATTTAACCCAAATTCGAAGATTGGTACTTTCCTCCAATAATTTTACTGGAGAACTTCCGGTTGCATTGGGCAAACTCTCTGAATTGAAAGATTTTCGAATAGGGGACAATCAATTTTCTGGGAAGATACCTGACTTCATTCAAAATCTGAGAAATCTAGAGATATTGAGGATTGAAGGGAGTGGATTAAGTGGACCAATTCCTTCTGGAATTTCAGATCTGCAAAACTTAATTGACTTGATAATTAGTGATCTAAGAGGATCTGAAACTTCAACTTTTCCTCTACTTGATAAAATGAACTTGGAGAAGTTGATTCTGAGAAATTGTAACATCATTGGAGATTTACCCGAATATCTTGGGAAAATCGCAAGTTTAGATGACAACTTAGACCTCAGCTTTAACAAGTTGACTGGACCAATTCCAAATACCTATGCTGCCCTAGCAACAAAAGTGACGAACATATATTTAACTGGAAATCTTCTAAATGGACCACTGCCTTCATGGACAGAGAAAGCCAAGTCAATAGGAGAAGATGCTTGTTTGGAAGGTCATACATGTTCCAAAATGTTATACAATCTTCGTATAAATTGTGGTGGAAATGCGGTAACAGTCAATGGAAACACATATGATGATGATGTAGATGATGGAGATGCAACTAGATTTCTTTGGAATAGAGGGAGAAATTGGGCAGTTAGCACTACTGGTAACTTTATGAATAATAATAATTATCATGCAGGAAAGTATCTAGTCTCAAAAACATATGGGCTTTCTACGAAGAATGTTGACATGTACACGACTGCACGAGCTTCTCCCATTTCATTGACTTATTATGGATTTTGCTTGCAAAATGGAAACTATACAATATTTTTGCATTTTGCTGAAATTGTGTTCACTGATGATCAAACGTTTAACAACTTAGGAAGACGAGTATTTGACATCTACATTCAGGGAAAACTAGTGAAAGAAAGCTTCAATATTGCAGAAGAAGCAGGAGGTAATGGTAAGCCAATCATAAAAAAATTTACTACTGTTGTGAGTAATAATACCTTGAATATACGCTTGAATTGGGCTGGAAAAGGGACAATTGCACTCCCATTTGGATCAGTATATGGTCCTCTTATATCAGCTATAACTGTGAACTCAGACAATCCACCTGGAAGTAGCATATCAGTAGGCATTGTGGTTGGAATTGTGGTTGCATTGGTAGTTATTATCATCCTTTTGGTTGGTATACTTTGGTGGAAATGCTGCTTAAGAAAGAAAAGCTCCTTAGAAAGAGAGTTAAAAGGTTTAGAATTACGAACAAGTGTATTCACTTTAAGACAAATAAAATTGGCAACAAACAACTTTGATGAGGAGAATAAGATTGGAGAAGGAGGATTTGGTCCTGTGTACAAGGGATGTCTATCTGATGGGACACTAATAGCAGTAAAACTACTCTCTTCTAAATCAAGACAAGGGAATCGAGAGTTCTTAAATGAGATAGGAATGATTTCAGCTTTGCAACATCCTTATCTTGTTAAATTATATGGATGTTGTGTAGAGGGAAATCACCTATTGTTGGTATATGAGTATATGGAAAACAATAACCTTGCTCGTGCTTTATTTGGCCCAGAAGAACTCCAGATAAAATTGGATTGGCCAACAAGATACAAGATTTGTGTTGGTATTGCTAGAGGTTTAGCTTACCTCCATGAAGAATCAAGATTGAAGGTTGTTCACAGGGACATTAAGGCCACTAATGTATTGCTTGATAAAGATCTCAACCCAAAGATATCAGACTTTGGTTTGGCCAAACTTGACGAGGAAGAAAATACTCATATTAGCACTCGAATAGCTGGGACATATGGATATATGGCTCCAGAATATGCCATGCATGGTTATTTGACTGATAAAGCAGATGTCTATAGTTTTGGAATTGTTGTCTTGGAAATTATAAATGGAAGGAACAATACCATTCATCGACAAAAAGAAGAATCGTTCTCAATTCTTGATTGGGCACATATGTTGAAAGAGAAATGTGATCTAATGGAGCTAGTGGATAGAAGATTGGGTTCAGACTTTAACAAAGAAGAGGTATTGGTGATGATAAAAGTGGCTCTATTATGCACTCAAGTGACTACAACACTGAGGCCAACAATGTCATCAGTAGTAAGCATATTGGAAGGAAAAAGTGTTGCTGAGGAAGTGGTTACAGAAGCAAGTGAGCTATTGGATGAGAAAAAGATGGATGCAATGAGAACATTTTACAATCAGCTACATATAGAAGTGCCATGGACTGCTTCATCTACATCTGCGTCAGATCTCTATCCCACACATCTTGATTCATCTTTTTTGGACAAGAGAAATCATCTCTAA	2874	0.3761	MSNPSFFFFFFFIASFFFASFAFASGATLPQDEVEALKDIGKRLGKKWDFSVDPCSGERNWSGNDNNITWAYDIHNGTVCHVTRIFLKSQSLPGMLPQNLFKLPYLQEIDLSRNYLNGTIPKEWGSTKLVTIALLGNRLTGSIPIEITNISTLEDLNLEANQLSESLPPELANLTQIRRLVLSSNNFTGELPVALGKLSELKDFRIGDNQFSGKIPDFIQNLRNLEILRIEGSGLSGPIPSGISDLQNLIDLIISDLRGSETSTFPLLDKMNLEKLILRNCNIIGDLPEYLGKIASLDDNLDLSFNKLTGPIPNTYAALATKVTNIYLTGNLLNGPLPSWTEKAKSIGEDACLEGHTCSKMLYNLRINCGGNAVTVNGNTYDDDVDDGDATRFLWNRGRNWAVSTTGNFMNNNNYHAGKYLVSKTYGLSTKNVDMYTTARASPISLTYYGFCLQNGNYTIFLHFAEIVFTDDQTFNNLGRRVFDIYIQGKLVKESFNIAEEAGGNGKPIIKKFTTVVSNNTLNIRLNWAGKGTIALPFGSVYGPLISAITVNSDNPPGSSISVGIVVGIVVALVVIIILLVGILWWKCCLRKKSSLERELKGLELRTSVFTLRQIKLATNNFDEENKIGEGGFGPVYKGCLSDGTLIAVKLLSSKSRQGNREFLNEIGMISALQHPYLVKLYGCCVEGNHLLLVYEYMENNNLARALFGPEELQIKLDWPTRYKICVGIARGLAYLHEESRLKVVHRDIKATNVLLDKDLNPKISDFGLAKLDEEENTHISTRIAGTYGYMAPEYAMHGYLTDKADVYSFGIVVLEIINGRNNTIHRQKEESFSILDWAHMLKEKCDLMELVDRRLGSDFNKEEVLVMIKVALLCTQVTTTLRPTMSSVVSILEGKSVAEEVVTEASELLDEKKMDAMRTFYNQLHIEVPWTASSTSASDLYPTHLDSSFLDKRNHL	957

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun5g02440	957	FunFam	probable LRR receptor-like serine/threonine-protein kinase At1g53430	591	697	-	-
	Viun5g02440	957	Gene3D	Transferase(Phosphotransferase) domain 1	698	910	-	-
	Viun5g02440	957	CDD	STKc_IRAK	628	895	-	-
	Viun5g02440	957	Gene3D	-	362	555	-	-
	Viun5g02440	957	Gene3D	Ribonuclease Inhibitor	259	349	IPR032675	-
	Viun5g02440	957	FunFam	Putative LRR receptor-like serine/threonine-protein kinase	698	905	-	-
	Viun5g02440	957	SMART	serkin_6	622	867	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun5g02440	957	Pfam	Protein kinase domain	623	889	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun5g02440	957	Gene3D	Phosphorylase Kinase; domain 1	586	697	-	-
	Viun5g02440	957	SUPERFAMILY	Protein kinase-like (PK-like)	606	898	IPR011009	-
	Viun5g02440	957	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	744	756	IPR008271	GO:0004672\|GO:0006468
	Viun5g02440	957	Gene3D	Ribonuclease Inhibitor	30	258	IPR032675	-
	Viun5g02440	957	FunFam	Putative leucine-rich repeat receptor-like serine/threonine-protein kinase	362	554	-	-
	Viun5g02440	957	Pfam	Malectin domain	364	549	IPR021720	-
	Viun5g02440	957	SUPERFAMILY	L domain-like	53	338	-	-
	Viun5g02440	957	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED	13	932	-	-
	Viun5g02440	957	FunFam	Probable LRR receptor-like serine/threonine-protein kinase RFK1	35	191	-	-
	Viun5g02440	957	ProSiteProfiles	Protein kinase domain profile.	622	903	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun5g02440	Viun-Chr5	34379086	34417046	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun5g02440	23	949	Receptor kinase-like Gene Family	AT1G53420	54.545	0.0	952

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Viun5g02440		Pkinase	1.6e-47	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun5g02440	-		-	gmx:732563	1278.85