Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g02439 ATGAGGGTGAGTTACCCTCGTTTCTTCTTATTCCTTCTGCTACTTGCTGTGTTCTGCTTTGCCTCCTTAGCTTCTGGAGCCACTCTTCCCCAAGATGAAGTGGAAGCTCTGAAAGATATAGGTAAGACACTTGGGAAGAAGAACTGGGATTTCAACGTTGATCCATGCAGTGGAGAACGAAATTGGACATCTGCAGTACAAGTAAAAGGGAGTGAAAATGAATTAAGATGCAATTGCTCTTATAACAATGACACCGTTTGTCATGTCACCAACATAATTTTGAAAGCACAAAATCTCCCAGGAACTCTCCCCAAAGATCTGTTCAGATTGCCTTTCCTACTAGAATTTGACATTAGTCGCAATTACGTGAACGGTACAATTCCCAAAGAATGGGGCACCACCAAACTTCTCAACAACATTTCCCTCCTTGGAAATCGATTAACGGGTTCAATACCAAAAGAGATAGCAAACATATCCACTCTTCAAAGTTTGGTCTTGGAGGCCAATCAACTATCTGGAGAACTTCCTCCTGAGCTTGGAAATCTACCCCAAATTCAAAGACTGTTACTTTCCTCTAACAATTTTACTGGAGAGTTACCTGAAACATTGGCCAAGCTCACTACATTGCAGGATATTCGAATTGGGGACAATCAGTTTTCTGGGAAGATACCTGATTTTATTCAAAGTTGGACAAGTCTCCAAAAACTAGTGATTCAAGGGAGTGGTTTCGATGGGCCTATTCCTTCTGCAATCTCACTTCTGAAAAACTTAACTGACTTGAGAATTAGTGATCTGAATGGATCTGAACAATCATCTTTTCCACAACTTAATAACATGACGTTAAAATATTTGATTTTGAGGAATTGCAACATCAATGGAACACTACCAACATATCTCGCGACAATGACAACCTTGAAAAACTTAGACCTCAGCTTTAACAAATTGACTGGACCAATTCCGAGCGACTATGAAGCCCTGAGAAAAGTTGATTACATATATTTAACTGGAAATCTTCTCAATGGACAAGTACCTGCATGGACAGAGAAAGCTGACAATGTAGATATTTCATACAACAACTTCACGACAAGCCAAGGGAATCCTACATGTCAAAATGGAAATGTGAACTTGTTTTCTAGCTCCAAAACGCACAATGACTCAGGAACAGTTGCTTGCCTGGGAAACAATGTCTGTCAAAAAAACTCATACTCCCTTCATATAAACTGTGGTGGAAAGATGATAACAGAAGGCAAAAGCACATATGATGATGATTTAGATAATGGAGGGCCAGCTAGATTTCACCGAAGTGGATCAAAAAGTTGGGCATTTATCACTACTGGTAACTTTATGGATAATGATGCTGGCGACTACTCTATCTGGCAAAATAAGTCAGCTATTTCAGTGGACAACGCTGATCTCTACATGGATGCACGAGTTTCTCCCACGTCTCTAACTTACTATGGATTTTGCTTGGGAAATGGAAACTACACAGTCAATCTACATTTTGCAGAAATCATGTTTATCAATGATTCAACATTTAACAGTTTAGGAAGACGAGTATTTGACATCTATATTCAGGAAGAGCTGGTGCAGAAGGACTTCAATATTGTAGAAGAAGCAGGAGGGATTGGCAAAGCAATCATAAAACACTTCACTGCAGTTGTGAGTGGTAATACTTTGGAGATACGTTTGTATTGGGCTGGAAAAGGAACAACTAGTCTCCCATTTAGATCAGTATATGGTCCTCTTATATCAGCTATATCAGTTGAACCTAACTTTACACCACCCTCAGAAAATGGAAGTAGCATATCTGCAGGAGCTGTGGCTGGAATTGTGGTTGCAGTAGCAATAGTTATCATTCTTGTACTTGGTATTCTTTGGTGGAAAGGATGTCTAGGAAAGAAAAGTTCTTTAGAAAAAGAGATAAGGAGTTTAGACCTGCGAACTGGTTTGTTTAGTTTAAGAGATATCAAAGCAGCAACAAACAACTTTGATGTTGCAAATAAGATTGGAGAAGGAGGATTTGGTCCTGTGTACAAGGGATGTCTATCAGATGGAACACTTGTAGCAGTGAAGCAACTTTCTTCTAAATCAAAGCAAGGAAATCGTGAGTTTATAACAGAGATAGGCATGATTTCTGCTTTGCAACATCCTTGTCTTGTTAAACTTTATGGATGCTGTGTGGAGGGTGATCAACTACTATTGGTATATGAATATATGGAAAACAATAGCCTTGCTCGTGCTTTATTTGGACCTGAAGAACACCAAATAAGATTGGATTGGACAACAAGATACAAGATTTGTATTGGTATTGCTAGAGGTTTGGCTTACCTCCATGAAGAATCAAGATTGAAGGTTGTCCATAGAGACATCAAAACCACTAATGTGTTGCTTGATAAAGATCTCAACCCAAAGATATCAGACTTTGGTTTGGCCAAACTTGATGAGGAAGAAAATACTCATATTAGCACCCGAATAGCTGGAACATATGGATATATGGCTCCAGAATATGCCATGCATGGTTATTTGACTGATAAAGCAGACGTCTATAGTTTTGGAATTGTTGTGTTGGAAATCATAAATGGAAGGAGCAACACCATTCACCGTCCAAAAGAACAATCATTCTCCATTCTTGAATGGGCAAATCTGTTGAAAGAGAAAGGTGATCTAATGGACCTAGTTGATAGAAGATTGGGAACAAACTTCAACAAAGAGGAGGTGTTAGTGTTGATAAGGGTGGCTCTCTTATGCACCAATGTTACTACACAGCTTAGGCCAAGCATGTCTTCAGTGGTAAGCATGCTAGAAGGAAGAACTGTTGTTGAGGAAGTGTTTTCAGAGGCAAATGATGTGGAAGAGAAGAAGATGGAGAAAATGAGGCAATACTACCAAGAATTGAGTATCTCAACGGATGAGCCATGGACTTCATCATCCACTTCTGCAGCAGATCTTTATCCTGTAAATGTGGATTCTTCTTACTTGCAGAAGAGAGGTTAG 2994 0.3935 MRVSYPRFFLFLLLLAVFCFASLASGATLPQDEVEALKDIGKTLGKKNWDFNVDPCSGERNWTSAVQVKGSENELRCNCSYNNDTVCHVTNIILKAQNLPGTLPKDLFRLPFLLEFDISRNYVNGTIPKEWGTTKLLNNISLLGNRLTGSIPKEIANISTLQSLVLEANQLSGELPPELGNLPQIQRLLLSSNNFTGELPETLAKLTTLQDIRIGDNQFSGKIPDFIQSWTSLQKLVIQGSGFDGPIPSAISLLKNLTDLRISDLNGSEQSSFPQLNNMTLKYLILRNCNINGTLPTYLATMTTLKNLDLSFNKLTGPIPSDYEALRKVDYIYLTGNLLNGQVPAWTEKADNVDISYNNFTTSQGNPTCQNGNVNLFSSSKTHNDSGTVACLGNNVCQKNSYSLHINCGGKMITEGKSTYDDDLDNGGPARFHRSGSKSWAFITTGNFMDNDAGDYSIWQNKSAISVDNADLYMDARVSPTSLTYYGFCLGNGNYTVNLHFAEIMFINDSTFNSLGRRVFDIYIQEELVQKDFNIVEEAGGIGKAIIKHFTAVVSGNTLEIRLYWAGKGTTSLPFRSVYGPLISAISVEPNFTPPSENGSSISAGAVAGIVVAVAIVIILVLGILWWKGCLGKKSSLEKEIRSLDLRTGLFSLRDIKAATNNFDVANKIGEGGFGPVYKGCLSDGTLVAVKQLSSKSKQGNREFITEIGMISALQHPCLVKLYGCCVEGDQLLLVYEYMENNSLARALFGPEEHQIRLDWTTRYKICIGIARGLAYLHEESRLKVVHRDIKTTNVLLDKDLNPKISDFGLAKLDEEENTHISTRIAGTYGYMAPEYAMHGYLTDKADVYSFGIVVLEIINGRSNTIHRPKEQSFSILEWANLLKEKGDLMDLVDRRLGTNFNKEEVLVLIRVALLCTNVTTQLRPSMSSVVSMLEGRTVVEEVFSEANDVEEKKMEKMRQYYQELSISTDEPWTSSSTSAADLYPVNVDSSYLQKRG 997
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g02439 997 SUPERFAMILY Protein kinase-like (PK-like) 647 945 IPR011009 -
Viun5g02439 997 Pfam Protein kinase domain 664 875 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g02439 997 FunFam Putative LRR receptor-like serine/threonine-protein kinase 739 946 - -
Viun5g02439 997 CDD STKc_IRAK 669 936 - -
Viun5g02439 997 ProSiteProfiles Protein kinase domain profile. 663 944 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g02439 997 FunFam Leucine-rich repeat transmembrane protein kinase 202 404 - -
Viun5g02439 997 Gene3D Ribonuclease Inhibitor 276 359 IPR032675 -
Viun5g02439 997 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 401 591 - -
Viun5g02439 997 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 14 961 - -
Viun5g02439 997 SUPERFAMILY L domain-like 77 345 - -
Viun5g02439 997 ProSitePatterns Serine/Threonine protein kinases active-site signature. 785 797 IPR008271 GO:0004672|GO:0006468
Viun5g02439 997 Gene3D - 398 591 - -
Viun5g02439 997 Pfam Leucine rich repeat 280 339 IPR001611 GO:0005515
Viun5g02439 997 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase isoform A 33 193 - -
Viun5g02439 997 Gene3D Ribonuclease Inhibitor 200 275 IPR032675 -
Viun5g02439 997 Gene3D Ribonuclease Inhibitor 33 199 IPR032675 -
Viun5g02439 997 Pfam Malectin domain 403 586 IPR021720 -
Viun5g02439 997 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 632 738 - -
Viun5g02439 997 SMART serkin_6 663 934 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g02439 997 Gene3D Transferase(Phosphotransferase) domain 1 739 953 - -
Viun5g02439 997 Gene3D Phosphorylase Kinase; domain 1 631 738 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g02439 Viun-Chr5 34343396 34352554 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g02439 23 982 Receptor kinase-like Gene Family AT1G53420 56.923 0.0 1040
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Viun5g02439 Pkinase 1.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g02439 - - gmx:732563 1623.22