Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g02438 ATGCCAACCATCACTTCCTCACACTTCTTCCTCATCCTTTCGCTCCTTCCATTTTGCTTCACATGGCTTGCTTTTGGAGACACACTGTCAGAGAATGAAGTGTGGGTGCTGAAAGATATAGCTAAAACACTTGGAAAGAAGGATTGGGACTTCAATGTAAATCCATGCCACTGGAACAACCAGACAGAAAGTAATATGATTCTTTGCAATTGCAAAATAACCAATCGCAGCTCCTGCCATATTCAGAAAATAGCTCTGAAATCACAGAGTCTTCAAGGTGTTCTCCCCCCACAACTGAACAAATTACCTTATCTCCAAGAAATTGAACTCAGTAGTAACTACATTAGTGGTTCAATCCCTAGAGAATGGGGCTCCTCCAACCTTCAAAAAATTTCACTTCTTGGAAACAGACTAACTGGTCCAATCCCAAAAGAGCTGGGAAACCTCACCAATCTTACACGCTTGATCCTTGACTTCAATCAATTATCTGGAAATCTTCCTTTAGAACTCGGAAATCTTGTCCTCATTCAAGAACTGCGTCTAAGTTCCAATAACTTCACTGGTCCATTGCCAGCAAATCTTTCGGTACTTACTGCAATGACGGATTTCCGAATTAGTGACAACCAGTTATCTGGCAACATACCTGATTGGCTTCGAAATTGGACAAGTCTTAGCAAACTATATATGCAAGGCTCTGGTTTGAAAGGACCAATTTTTTCTCCTGGAATTTCACTCCCACACTTAAACGACTTGAGGATTAGTGACTTGAATGGACCTGATTCAACTTTTCCACCACTTGAAAATATGAAAAATCTGAGTATTTTGATATTAAGGAGTTGCAATATCAATGACACATTTCCTCAGTATTTTGCAGACCTGCCGAAATTGAAAATGTTAGACCTAAGCTATAACAAATTAAATGGACAAGTGCCAGGAAGCCTTCAACAATTCAGTGCAGCAGCCAACATATATTTAACAGGAAACTTCTTCACTGGATCGGTGCCTGAGTGGACAATGGACAATAACAGAAGTTTAGATCTTTCATATAACAACTTCAGTTTTGGAAACCAAGAGCCTAAAACATGCTACCAGCAAAATGTGAACTTGTTTGCAAGCTTTTCAAGGAATAATTTAGGACCAGTGTCTTGTAACAGCAGCAGTAGAACCTGTACTGAAAAAGTTAAATCTCTACATATAAATTGTGGTGGAAACCAGACTACTATTGGAGGTATAACATATGATGAAGATATATATCCTGCTGGACCAGCAGTATATAGACAAAGTGGAAACAATTGGGCATTGAGCAACACAGGTCTCTTCATGGACAATAATAATACTCATCAAGGACAGCTTCTACCCTATACCACAAAAAATGAAACTAGGCTTTACATGACTAATGCTGAATTATATAAGAATGCACGTGTTTCTCCTATGTCATTGACTTATTATGGATTTTGTTTAGCAAATGGAGTTTACACAGTAAAGCTTCACTTTGCTGAGATAATGTTCACTGATAATAGCACATTCAGGGACTTAGGGAGGCGTGTATTTGATGTATACATTCAGGGAACGCGAGTGTTGAAAGATTTTAACATTGCAAATGAAGCAGAAGGAGTTGGAAAGGAACTCATAAAAGAATTTCTTGCTCGTGTGAGTGATAATGACCTGGAGATCCGCTTCTACTGGGGAGGCAAAGGGACAACCTCTATTCCATATAAATCAGTACATGGTCCTCTTATATCTGCCATTTCTGTCACGTATGGTGGGTTTTCACATTCCACAGGTGGATCCAAAACAAAAGAAGACTCAGAAGGTGGCATGTCTGCAGGAGTTATTGCTGTAATTGCAGTTGCATTGGTGATTGTTGTCATCTTGGTTACAGTTTGCGTACTTTGTTGGAGTGGTTTCATTAGTGGTTGTTGTCATCCTGATTCTTGTTGGCATTCTTTGCTGGAGGGGTTAAGGACAAACTCAAGCTTCGTACGTCATTTTGGTGGAAATGAACATTTATTGATGCAAGATCTCAGGGACATAGAACTGCAAACTGGTGTATTTACCTTGCATGAAATCAAAGTTGCAACAAAGAACTTTGATATTTGCAATAAGATTGGAGAAGGAGGCTTCGGTCCTGTTTATAAGGGCATTCTGCCAAACGGAAAACCAATAGCAGTTAAGCAACTTTCTTCTAAATCAGACCAAGGAACCCGAGAGTTTATAAATGAGATTGGCATGATCTCTGCTCTGCAACATCCTAATCTTGTTAAACTTTATGGTTGTTGTGCTGAGGGTGATCAATTGTTGTTAGTGTATGAATATATGGAAAACAATAGCCTAGCACGTGCTTTATTTGACTCAGAAGATAGCCATTTAAAATTGAATTGGGCAACAAGAAAAAAAATTTGTATTGGCATTGCTAGAGGTTTAGCTTTCCTGCATGAAGAATCAACACTGAAAGTTGTTCATAGAGACTTAAAGACCTCTAATGTGTTGCTTGATGAAGACCTAAACCCGAAGATATCTGATTTTGGTTTGGCTAGACTTCGTGTGGGGGAAAATACACACATAAGCACCAGAATTGCAGGGACTTGGGGATACATGGCTCCTGAGTATGCAATGCATGGTTATCTAACTGAAAAAGCAGATATTTTTAGTTTTGGAGTTGTTATCTCGGAAATTGTAAGTGGAAAGAGAAACACTATTCGGCAGTCAAAAGGGGAAGCTTTCTATCTTCTGGATTGGGCACGTTTGTTGAATGAGAGAGGTAACATAATAGAGCTAGTTGATCCAAAGTTAAATTTAGATTTCAATGAAGATGAGGTAAGGTTGATTGTCAAAGTGGCTCTCCATTGCACCCATGTTAATTCAAGCTACAGACCCTGTATGTCTTCAGTGCTAAGCATGCTTGAAGGCAGAACAATGGTCCCAGAGTTTGATTCACAGTGTAGTGAAGTGATGGATGCGATGAAGCTGGAGGTAATGAGAGAGTTTTACAGTCAAATGGATGAAAATAAGACAAGTGACACAAGAAGTTTGAGCTTAAAAGGTGTTCCATGGACTGATTCTTCTTCAACATCTACAGACCTTAATTTGACTCAGCTTGATGCTTAA 3108 0.3916 MPTITSSHFFLILSLLPFCFTWLAFGDTLSENEVWVLKDIAKTLGKKDWDFNVNPCHWNNQTESNMILCNCKITNRSSCHIQKIALKSQSLQGVLPPQLNKLPYLQEIELSSNYISGSIPREWGSSNLQKISLLGNRLTGPIPKELGNLTNLTRLILDFNQLSGNLPLELGNLVLIQELRLSSNNFTGPLPANLSVLTAMTDFRISDNQLSGNIPDWLRNWTSLSKLYMQGSGLKGPIFSPGISLPHLNDLRISDLNGPDSTFPPLENMKNLSILILRSCNINDTFPQYFADLPKLKMLDLSYNKLNGQVPGSLQQFSAAANIYLTGNFFTGSVPEWTMDNNRSLDLSYNNFSFGNQEPKTCYQQNVNLFASFSRNNLGPVSCNSSSRTCTEKVKSLHINCGGNQTTIGGITYDEDIYPAGPAVYRQSGNNWALSNTGLFMDNNNTHQGQLLPYTTKNETRLYMTNAELYKNARVSPMSLTYYGFCLANGVYTVKLHFAEIMFTDNSTFRDLGRRVFDVYIQGTRVLKDFNIANEAEGVGKELIKEFLARVSDNDLEIRFYWGGKGTTSIPYKSVHGPLISAISVTYGGFSHSTGGSKTKEDSEGGMSAGVIAVIAVALVIVVILVTVCVLCWSGFISGCCHPDSCWHSLLEGLRTNSSFVRHFGGNEHLLMQDLRDIELQTGVFTLHEIKVATKNFDICNKIGEGGFGPVYKGILPNGKPIAVKQLSSKSDQGTREFINEIGMISALQHPNLVKLYGCCAEGDQLLLVYEYMENNSLARALFDSEDSHLKLNWATRKKICIGIARGLAFLHEESTLKVVHRDLKTSNVLLDEDLNPKISDFGLARLRVGENTHISTRIAGTWGYMAPEYAMHGYLTEKADIFSFGVVISEIVSGKRNTIRQSKGEAFYLLDWARLLNERGNIIELVDPKLNLDFNEDEVRLIVKVALHCTHVNSSYRPCMSSVLSMLEGRTMVPEFDSQCSEVMDAMKLEVMREFYSQMDENKTSDTRSLSLKGVPWTDSSSTSTDLNLTQLDA 1035
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g02438 1035 Pfam Malectin domain 396 583 IPR021720 -
Viun5g02438 1035 Pfam Leucine rich repeat 271 328 IPR001611 GO:0005515
Viun5g02438 1035 Gene3D Ribonuclease Inhibitor 194 396 IPR032675 -
Viun5g02438 1035 SUPERFAMILY Protein kinase-like (PK-like) 680 982 IPR011009 -
Viun5g02438 1035 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 666 772 - -
Viun5g02438 1035 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 18 1003 - -
Viun5g02438 1035 FunFam Putative LRR receptor-like serine/threonine-protein kinase 773 980 - -
Viun5g02438 1035 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 35 190 - -
Viun5g02438 1035 Pfam Protein kinase domain 699 964 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g02438 1035 Gene3D Ribonuclease Inhibitor 35 193 IPR032675 -
Viun5g02438 1035 ProSitePatterns Serine/Threonine protein kinases active-site signature. 819 831 IPR008271 GO:0004672|GO:0006468
Viun5g02438 1035 Gene3D Transferase(Phosphotransferase) domain 1 773 986 - -
Viun5g02438 1035 ProSiteProfiles Protein kinase domain profile. 697 977 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g02438 1035 CDD STKc_IRAK 703 970 - -
Viun5g02438 1035 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 394 588 - -
Viun5g02438 1035 MobiDBLite consensus disorder prediction 1008 1035 - -
Viun5g02438 1035 Gene3D Phosphorylase Kinase; domain 1 666 772 - -
Viun5g02438 1035 SMART serkin_6 697 968 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g02438 1035 Gene3D - 397 588 - -
Viun5g02438 1035 SUPERFAMILY L domain-like 65 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g02438 Viun-Chr5 34299035 34314944 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g02438 23 1027 Receptor kinase-like Gene Family AT1G53420 47.572 0.0 892
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Viun5g02438 Pkinase 2.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g02438 - - vra:106779468 1790.78