Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g02428 ATGAAGACAACCACTTTCTCTGAATTTCTGCTCCTTTCACTACTTGCTTCTTATTTCGCATCACTTCATGGATCCACTACTGACCCAAAGGAAGTGCAAGCTCTTAGAGATATAGCTAAAACACTTGGAAAAAGTGGTTGGGACTTCAATGTAGATCCATGCAATACAAGTGTAGAATGGACTTTGCCTGGACCCTATGACTCAAAACAAGTTCCCAGAAATAATGTCTCCTGCGATTGTTCCATTGACAAATTCTGCCATGTTACTAGCATTGACATTGTGGGAGACAGTCTTCAAGGCAATCTTCCAAGAGAGCTGGTTGGGTTACCCTACATTCAAAATATTGACTTGTCCCTCAATTACCTTAACGGTACAGTTCCTGAAGAATGGGCAACCTTGAAATATCTAAATAAGATTGCCCTATTGGGAAATCGACTAAGTGGTCCATTCCCTGAAGTGCTGACACAAATCACCACTCTCACAACTTTGGTTCTGGAGTCAAATAATTTCTATGGAAATCTTCCTCCAGCACTTGGGCATCTTCCTCAGTTAGAAAGATTGCTACTTAGCTCTAACAATTTCACAGGGGAGTGGCCTCAAACATTTTCCAACCTTACTACATTGAAAGATGTACGTCTTGGCGATAATCAATTTTCTGGAAAGATACCTAAATTTATTGAGAAATGGATAAATCTCCAAATATTAGATATTACAGGGAGTGGCTTGGAAGGACCATTTCCATCTGGATTTTCATTTCCACAAAGCTTAATCAAATTGGAAGTTACCGACTTAAATGGACCCGAGTCAACTTTTCCATTAGTTAACTTGACACTATTGGAACGATTGATATTAAGGAGCTGCAATATTAACGACAAAATACCAGAATATATTGGAAACTTGACAAATTTGAAACTTCTGGATCTCAGCTACAACAAATTAAGGGGAAAAATTCCAAACATGGAAGGACTGATTAACGCTACAAATATATATTTGACTGGAAACCTTCTAACTGGATCAAGAAATGAATGGAGACTACCTGAGAAGAAGATTAAGTCCATAGATCTTTCATACAACAATTTCAGCAACGATAATGAAAGAGCACCACGATGTCAAGATCAAAAGAAGAATCTTTTTGCAAGCTTTTCAAGTGAGAACAACTCAGGACCCTATTTATGTATAATGGACAAGTGTCGTAAGACCTTTTACTTCTTCCATATAAATTGTGGTGGAAATGAAGAGATAACCATTGGAGATACAACATATGATCGTGATTTATACGTTCAATCCGAAGAAGTGGCTTATTCGTCGATGTCAAATTGGGCAATTAGCAATACTGGTTTCCTACTGGACGCTAACAATGAAAAAGAAGCACGTAGTAGCTACCAAGTACAAAACATATCAAGGCTTTCTATGTCGGATGATGAAGCTAAACTATATAGCACTGCAAGAATCTCTCCTCTTTCTTTAACTTATTATGGATTTTGCCTCGCAAATGGGAATTACACAGTAAAACTTCACTTTGCTGAGATAATGTTCACTGATGATAACACTTACAAAAGCCTAGGTAGACGCGTTTTTGATGTCTACATTCAGGGAAAACGAGTATTGAAGGATTTCAATATAGCAAAGATAGCACAAGGGGCTGGAAAGGCACATATAGAAAATTTTACTGCTTCTGTGAGTAACTCAACCTTAGAGATTCGTTTCTATTGGGCAGGAAAAGGGTCAACTGGTATTCCAAAAAGATCAGTATATGGCCCTCTTATTTCAGCAATATCTGTCACTTCTGATTTTAAACCCCCATCACCACCAAGTCATAAACGGGTTGCAACATCAATTATTCTCATTGTGGTTGCAATATCAATTATTCTCATCTTGGTGGCTGGCATACTTTGGTGGAGATTTTGTCTTAAAAGTAATAATTCATTAGCTAAAGAATTCAAGGATTTAGATTTGAAAACTGGTGTATTTACCTTACGTCAAATCAAAGTAGCAACAAATAATTTTAATATTTCCAACAAGATTGGAGAAGGAGGATTTGGTCCAGTATATAAGGGCATTTTGTGGGATGGCACAATGATAGCAGTCAAACTGCTTTCATCTAAATCAAAACAAGGAAACCGTGAGTTCATAAATGAGATAGGCTTGATCTCAGCTTTGCAACATCCTTGTCTGGTTAAACTTTATGGTTGTTGTGTCGATGGAGATCAACTATTGTTGGTATATGAATATTTGGAAAACAATAATCTAGCACGGGCTTTATTTGGTAATGAAGAACACAGTTTGAAATTAAATTGGGCAACAAGGCAGAAGATCTGCATAGGTATTGCTAGAGGTTTGGCTTTCCTACATGAAGAATCAAGATTAAAAATTGTTCACAGGGACATCAAGGCCACTAATGTTTTGCTTGATAAAGAGCTAAATCCAAAGATATCTGATTTTGGTTTAGCTAAACTTGATGATGAAGACAACACTCATATAAGCACTCGAATAGCTGGGACCTACGGATATATGGCTCCCGAATATGCCATGCATGGTTATTTGACAGATAAAGCAGATGTTTATAGTTTTGGAATTGTTGCCTTGGAAATTGTTAGTGGAAAGAGTAACACAATCCGCCGACCAAAGGAAGGAACGATGTGTCTTCTTGATTCGTTAGGCACGTGTGTTGAAAGTAGAAGGCAAATTAATTGA 2694 0.3742 MKTTTFSEFLLLSLLASYFASLHGSTTDPKEVQALRDIAKTLGKSGWDFNVDPCNTSVEWTLPGPYDSKQVPRNNVSCDCSIDKFCHVTSIDIVGDSLQGNLPRELVGLPYIQNIDLSLNYLNGTVPEEWATLKYLNKIALLGNRLSGPFPEVLTQITTLTTLVLESNNFYGNLPPALGHLPQLERLLLSSNNFTGEWPQTFSNLTTLKDVRLGDNQFSGKIPKFIEKWINLQILDITGSGLEGPFPSGFSFPQSLIKLEVTDLNGPESTFPLVNLTLLERLILRSCNINDKIPEYIGNLTNLKLLDLSYNKLRGKIPNMEGLINATNIYLTGNLLTGSRNEWRLPEKKIKSIDLSYNNFSNDNERAPRCQDQKKNLFASFSSENNSGPYLCIMDKCRKTFYFFHINCGGNEEITIGDTTYDRDLYVQSEEVAYSSMSNWAISNTGFLLDANNEKEARSSYQVQNISRLSMSDDEAKLYSTARISPLSLTYYGFCLANGNYTVKLHFAEIMFTDDNTYKSLGRRVFDVYIQGKRVLKDFNIAKIAQGAGKAHIENFTASVSNSTLEIRFYWAGKGSTGIPKRSVYGPLISAISVTSDFKPPSPPSHKRVATSIILIVVAISIILILVAGILWWRFCLKSNNSLAKEFKDLDLKTGVFTLRQIKVATNNFNISNKIGEGGFGPVYKGILWDGTMIAVKLLSSKSKQGNREFINEIGLISALQHPCLVKLYGCCVDGDQLLLVYEYLENNNLARALFGNEEHSLKLNWATRQKICIGIARGLAFLHEESRLKIVHRDIKATNVLLDKELNPKISDFGLAKLDDEDNTHISTRIAGTYGYMAPEYAMHGYLTDKADVYSFGIVALEIVSGKSNTIRRPKEGTMCLLDSLGTCVESRRQIN 897
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g02428 897 SUPERFAMILY Protein kinase-like (PK-like) 655 872 IPR011009 -
Viun5g02428 897 SMART serkin_6 669 886 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g02428 897 Gene3D Ribonuclease Inhibitor 266 389 IPR032675 -
Viun5g02428 897 FunFam Os07g0541700 protein 745 834 - -
Viun5g02428 897 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 17 892 - -
Viun5g02428 897 Gene3D Transferase(Phosphotransferase) domain 1 745 895 - -
Viun5g02428 897 Gene3D Phosphorylase Kinase; domain 1 634 744 - -
Viun5g02428 897 ProSiteProfiles Leucine-rich repeat profile. 302 324 IPR001611 GO:0005515
Viun5g02428 897 Gene3D - 400 598 - -
Viun5g02428 897 ProSiteProfiles Protein kinase domain profile. 669 897 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g02428 897 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 638 744 - -
Viun5g02428 897 FunFam Leucine-rich repeat receptor protein kinase EMS1 150 249 - -
Viun5g02428 897 SUPERFAMILY L domain-like 77 341 - -
Viun5g02428 897 ProSitePatterns Serine/Threonine protein kinases active-site signature. 791 803 IPR008271 GO:0004672|GO:0006468
Viun5g02428 897 Gene3D Ribonuclease Inhibitor 28 265 IPR032675 -
Viun5g02428 897 Pfam Protein tyrosine and serine/threonine kinase 670 870 IPR001245 GO:0004672|GO:0006468
Viun5g02428 897 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 401 597 - -
Viun5g02428 897 Pfam Malectin domain 404 592 IPR021720 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g02428 Viun-Chr5 34170588 34194896 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g02428 18 884 Receptor kinase-like Gene Family AT1G53420 54.525 0.0 870
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Viun5g02428 PK_Tyr_Ser-Thr 5.1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g02428 - - vvi:100255520 999.964