LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun5g02427	ATGAAGACAACCACTTTCTCTGAATTTCTGCTCCTTTCACTACTTGCTTCTTATTTCGCATCACTTCATGGATCCACTACTGACCCAAAGGAAGTGCAAGCTCTTAGAGATATAGCTAAAACACTTGGAAAAAGTGGTTGGGACTTCAATGTAGATCCATGCAATACAAGTGTAGAATGGACTTTGCCTGGACCCTATGACTCAAAACAAGTTCCCAGAAATAATGTCTCCTGCGATTGTTCCATTGACAAATTCTGCCATGTTACTAGCATTGACATTGTGGGAGACAGTCTTCAAGGCAATCTTCCAAGAGAGCTGGTTGGGTTACCCTACATTCAAAATATTGACTTGTCCCTCAATTACCTTAACGGTACAGTTCCTGAAGAATGGGCAACCTTGAAATATCTAAATAAGATTGCCCTATTGGGAAATCGACTAAGTGGTCCATTCCCTGAAGTGCTGACACAAATCACCACTCTCACAACTTTGGTTCTGGAGTCAAATAATTTCTATGGAAATCTTCCTCCAGCACTTGGGCATCTTCCTCAGTTAGAAAGATTGCTACTTAGCTCTAACAATTTCACAGGGGAGTGGCCTCAAACATTTTCCAACCTTACTACATTGAAAGATGTACGTCTTGGCGATAATCAATTTTCTGGAAAGATACCTAAATTTATTGAGAAATGGATAAATCTCCAAATATTAGATATTACAGGGAGTGGCTTGGAAGGACCATTTCCATCTGGATTTTCATTTCCACAAAGCTTAATCAAATTGGAAGTTACCGACTTAAATGGACCCGAGTCAACTTTTCCATTAGTTAACTTGACACTATTGGAACGATTGATATTAAGGAGCTGCAATATTAACGACAAAATACCAGAATATATTGGAAACTTGACAAATTTGAAACTTCTGGATCTCAGCTACAACAAATTAAGGGGAAAAATTCCAAACATGGAAGGACTGATTAACGCTACAAATATATATTTGACTGGAAACCTTCTAACTGGATCAAGAAATGAATGGAGACTACCTGAGAAGAAGATTAAGTCCATAGATCTTTCATACAACAATTTCAGCAACGATAATGAAAGAGCACCACGATGTCAAGATCAAAAGAAGAATCTTTTTGCAAGCTTTTCAAGTGAGAACAACTCAGGACCCTATTTATGTATAATGGACAAGTGTCGTAAGACCTTTTACTTCTTCCATATAAATTGTGGTGGAAATGAAGAGATAACCATTGGAGATACAACATATGATCGTGATTTATACGTTCAATCCGAAGAAGTGGCTTATTCGTCGATGTCAAATTGGGCAATTAGCAATACTGGTTTCCTACTGGACGCTAACAATGAAAAAGAAGCACGTAGTAGCTACCAAGTACAAAACATATCAAGGCTTTCTATGTCGGATGATGAAGCTAAACTATATAGCACTGCAAGAATCTCTCCTCTTTCTTTAACTTATTATGGATTTTGCCTCGCAAATGGGAATTACACAGTAAAACTTCACTTTGCTGAGATAATGTTCACTGATGATAACACTTACAAAAGCCTAGGTAGACGCGTTTTTGATGTCTACATTCAGGGAAAACGAGTATTGAAGGATTTCAATATAGCAAAGATAGCACAAGGGGCTGGAAAGGCACATATAGAAAATTTTACTGCTTCTGTGAGTAACTCAACCTTAGAGATTCGTTTCTATTGGGCAGGAAAAGGGTCAACTGGTATTCCAAAAAGATCAGTATATGGCCCTCTTATTTCAGCAATATCTGTCACTTCTGATTTTAAACCCCCATCACCACCAAGTCATAAACGGGTTGCAACATCAATTATTCTCATTGTGGTTGCAATATCAATTATTCTCATCTTGGTGGCTGGCATACTTTGGTGGAGATTTTGTCTTAAAAGTAATAATTCATTAGCTAAAGAATTCAAGGATTTAGATTTGAAAACTGGTGTATTTACCTTACGTCAAATCAAAGTAGCAACAAATAATTTTAATATTTCCAACAAGATTGGAGAAGGAGGATTTGGTCCAGTATATAAGGGCATTTTGTGGGATGGCACAATGATAGCAGTCAAACTGCTTTCATCTAAATCAAAACAAGGAAACCGTGAGTTCATAAATGAGATAGGCTTGATCTCAGCTTTGCAACATCCTTGTCTGGTTAAACTTTATGGTTGTTGTGTCGATGGAGATCAACTATTGTTGGTATATGAATATTTGGAAAACAATAATCTAGCACGGGCTTTATTTGGTAATGAAGAACACAGTTTGAAATTAAATTGGGCAACAAGGCAGAAGATCTGCATAGGTATTGCTAGAGGTTTGGCTTTCCTACATGAAGAATCAAGATTAAAAATTGTTCACAGGGACATCAAGGCCACTAATGTTTTGCTTGATAAAGAGCTAAATCCAAAGATATCTGATTTTGGTTTAGCTAAACTTGATGATGAAGACAACACTCATATAAGCACTCGAATAGCTGGGACCTACGGATATATGGCTCCCGAATATGCCATGCATGGTTATTTGACAGATAAAGCAGATGTTTATAGTTTTGGAATTGTTGCCTTGGAAATTGTTAGTGGAAAGAGTAACACAATCCGCCGACCAAAGGAAGGAACGATGTGTCTTCTTGATTCGGCACGTGTGTTGAAAGTAGAAGGCAAATTAATTGAGTTAGTTGATGAAAGACTAGGGTCAAATTTCAATGAAGAAGAAGTGATGGTGATGATTAAGGTGGCTCTTCTGTGCACCAACGCCACTTCCAATCTTAGACCCACCATGTCTTCAGTTGTTAGCATGCTTGAAGGCAAAAGTCTTGTTTCAGAATTTACTTCAAATACAAGTGAAGTAATGGATGAAATGAAGTTAGAAGCAATGAGACAGTACTATAATCAAACAACACAAAAGGAGTTAACGGTGCCACAAAGTCAAAGTTTATCAATTGAATGGCCTTCATCTTCATCTTCTGTTGATCTCTATCCCATTAACCTTAATTCGTCAAACTTGGAGACAAAGAGATTAAAAGATTCTATATAA	3054	0.373	MKTTTFSEFLLLSLLASYFASLHGSTTDPKEVQALRDIAKTLGKSGWDFNVDPCNTSVEWTLPGPYDSKQVPRNNVSCDCSIDKFCHVTSIDIVGDSLQGNLPRELVGLPYIQNIDLSLNYLNGTVPEEWATLKYLNKIALLGNRLSGPFPEVLTQITTLTTLVLESNNFYGNLPPALGHLPQLERLLLSSNNFTGEWPQTFSNLTTLKDVRLGDNQFSGKIPKFIEKWINLQILDITGSGLEGPFPSGFSFPQSLIKLEVTDLNGPESTFPLVNLTLLERLILRSCNINDKIPEYIGNLTNLKLLDLSYNKLRGKIPNMEGLINATNIYLTGNLLTGSRNEWRLPEKKIKSIDLSYNNFSNDNERAPRCQDQKKNLFASFSSENNSGPYLCIMDKCRKTFYFFHINCGGNEEITIGDTTYDRDLYVQSEEVAYSSMSNWAISNTGFLLDANNEKEARSSYQVQNISRLSMSDDEAKLYSTARISPLSLTYYGFCLANGNYTVKLHFAEIMFTDDNTYKSLGRRVFDVYIQGKRVLKDFNIAKIAQGAGKAHIENFTASVSNSTLEIRFYWAGKGSTGIPKRSVYGPLISAISVTSDFKPPSPPSHKRVATSIILIVVAISIILILVAGILWWRFCLKSNNSLAKEFKDLDLKTGVFTLRQIKVATNNFNISNKIGEGGFGPVYKGILWDGTMIAVKLLSSKSKQGNREFINEIGLISALQHPCLVKLYGCCVDGDQLLLVYEYLENNNLARALFGNEEHSLKLNWATRQKICIGIARGLAFLHEESRLKIVHRDIKATNVLLDKELNPKISDFGLAKLDDEDNTHISTRIAGTYGYMAPEYAMHGYLTDKADVYSFGIVALEIVSGKSNTIRRPKEGTMCLLDSARVLKVEGKLIELVDERLGSNFNEEEVMVMIKVALLCTNATSNLRPTMSSVVSMLEGKSLVSEFTSNTSEVMDEMKLEAMRQYYNQTTQKELTVPQSQSLSIEWPSSSSSVDLYPINLNSSNLETKRLKDSI	1017

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun5g02427	1017	FunFam	Putative leucine-rich repeat receptor-like serine/threonine-protein kinase	401	597	-	-
	Viun5g02427	1017	Gene3D	-	400	598	-	-
	Viun5g02427	1017	ProSiteProfiles	Leucine-rich repeat profile.	302	324	IPR001611	GO:0005515
	Viun5g02427	1017	Gene3D	Transferase(Phosphotransferase) domain 1	745	958	-	-
	Viun5g02427	1017	FunFam	Putative LRR receptor-like serine/threonine-protein kinase	745	952	-	-
	Viun5g02427	1017	FunFam	probable LRR receptor-like serine/threonine-protein kinase At1g53430	638	744	-	-
	Viun5g02427	1017	Gene3D	Phosphorylase Kinase; domain 1	634	744	-	-
	Viun5g02427	1017	Gene3D	Ribonuclease Inhibitor	267	389	IPR032675	-
	Viun5g02427	1017	CDD	STKc_IRAK	675	942	-	-
	Viun5g02427	1017	FunFam	Leucine-rich repeat receptor protein kinase EMS1	150	249	-	-
	Viun5g02427	1017	Gene3D	Ribonuclease Inhibitor	28	266	IPR032675	-
	Viun5g02427	1017	Pfam	Protein tyrosine and serine/threonine kinase	670	940	IPR001245	GO:0004672\|GO:0006468
	Viun5g02427	1017	ProSiteProfiles	Protein kinase domain profile.	669	950	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun5g02427	1017	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	791	803	IPR008271	GO:0004672\|GO:0006468
	Viun5g02427	1017	Pfam	Malectin domain	404	592	IPR021720	-
	Viun5g02427	1017	SUPERFAMILY	Protein kinase-like (PK-like)	652	953	IPR011009	-
	Viun5g02427	1017	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED	17	981	-	-
	Viun5g02427	1017	SMART	serkin_6	669	914	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun5g02427	1017	SUPERFAMILY	L domain-like	78	341	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun5g02427	Viun-Chr5	34170379	34194896	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun5g02427	18	993	Receptor kinase-like Gene Family	AT1G53420	52.738	0.0	944

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Viun5g02427		PK_Tyr_Ser-Thr	2.2e-46	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun5g02427	-		-	vvi:100255520	1110.13