LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun5g02426	ATGAAGACAACCACTTTCTCTGAATTTCTGCTCCTTTCACTACTTGCTTCTTATTTCGCATCACTTCATGGATCCACTACTGACCCAAAGGAAGTGCAAGCTCTTAGAGATATAGCTAAAACACTTGGAAAAAGTGGTTGGGACTTCAATGTAGATCCATGCAATACAAGTGTAGAATGGACTTTGCCTGGACCCTATGACTCAAAACAAGTTCCCAGAAATAATGTCTCCTGCGATTGTTCCATTGACAAATTCTGCCATGTTACTAGCATTGACATTGTGGGAGACAGTCTTCAAGGCAATCTTCCAAGAGAGCTGGTTGGGTTACCCTACATTCAAAATATTGACTTGTCCCTCAATTACCTTAACGGTACAGTTCCTGAAGAATGGGCAACCTTGAAATATCTAAATAAGATTGCCCTATTGGGAAATCGACTAAGTGGTCCATTCCCTGAAGTGCTGACACAAATCACCACTCTCACAACTTTGGTTCTGGAGTCAAATAATTTCTATGGAAATCTTCCTCCAGCACTTGGGCATCTTCCTCAGTTAGAAAGATTGCTACTTAGCTCTAACAATTTCACAGGGGAGTGGCCTCAAACATTTTCCAACCTTACTACATTGAAAGATGTACGTCTTGGCGATAATCAATTTTCTGGAAAGATACCTAAATTTATTGAGAAATGGATAAATCTCCAAATATTAGATATTACAGGGAGTGGCTTGGAAGGACCATTTCCATCTGGATTTTCATTTCCACAAAGCTTAATCAAATTGATATTAAGGAGCTGCAATATTAACGACAAAATACCAGAATATATTGGAAACTTGACAAATTTGAAACTTCTGGATCTCAGCTACAACAAATTAAGGGGAAAAATTCCAAACATGGAAGGACTGATTAACGCTACAAATATATATTTGACTGGAAACCTTCTAACTGGATCAAGAAATGAATGGAGACTACCTGAGAAGAAGATTAAGTCCATAGATCTTTCATACAACAATTTCAGCAACGATAATGAAAGAGCACCACGATGTCAAGATCAAAAGAAGAATCTTTTTGCAAGCTTTTCAAGTGAGAACAACTCAGGACCCTATTTATGTATAATGGACAAGTGTCGTAAGACCTTTTACTTCTTCCATATAAATTGTGGTGGAAATGAAGAGATAACCATTGGAGATACAACATATGATCGTGATTTATACGTTCAATCCGAAGAAGTGGCTTATTCGTCGATGTCAAATTGGGCAATTAGCAATACTGGTTTCCTACTGGACGCTAACAATGAAAAAGAAGCACGTAGTAGCTACCAAGTACAAAACATATCAAGGCTTTCTATGTCGGATGATGAAGCTAAACTATATAGCACTGCAAGAATCTCTCCTCTTTCTTTAACTTATTATGGATTTTGCCTCGCAAATGGGAATTACACAGTAAAACTTCACTTTGCTGAGATAATGTTCACTGATGATAACACTTACAAAAGCCTAGGTAGACGCGTTTTTGATGTCTACATTCAGGGAAAACGAGTATTGAAGGATTTCAATATAGCAAAGATAGCACAAGGGGCTGGAAAGGCACATATAGAAAATTTTACTGCTTCTGTGAGTAACTCAACCTTAGAGATTCGTTTCTATTGGGCAGGAAAAGGGTCAACTGGTATTCCAAAAAGATCAGTATATGGCCCTCTTATTTCAGCAATATCTGTCACTTCTGATTTTAAACCCCCATCACCACCAAGTCATAAACGGGTTGCAACATCAATTATTCTCATTGTGGTTGCAATATCAATTATTCTCATCTTGGTGGCTGGCATACTTTGGTGGAGATTTTGTCTTAAAAGTAATAATTCATTAGCTAAAGAATTCAAGGATTTAGATTTGAAAACTGGTGTATTTACCTTACGTCAAATCAAAGTAGCAACAAATAATTTTAATATTTCCAACAAGATTGGAGAAGGAGGATTTGGTCCAGTATATAAGGGCATTTTGTGGGATGGCACAATGATAGCAGTCAAACTGCTTTCATCTAAATCAAAACAAGGAAACCGTGAGTTCATAAATGAGATAGGCTTGATCTCAGCTTTGCAACATCCTTGTCTGGTTAAACTTTATGGTTGTTGTGTCGATGGAGATCAACTATTGTTGGTATATGAATATTTGGAAAACAATAATCTAGCACGGGCTTTATTTGGTAATGAAGAACACAGTTTGAAATTAAATTGGGCAACAAGGCAGAAGATCTGCATAGGTATTGCTAGAGGTTTGGCTTTCCTACATGAAGAATCAAGATTAAAAATTGTTCACAGGGACATCAAGGCCACTAATGTTTTGCTTGATAAAGAGCTAAATCCAAAGATATCTGATTTTGGTTTAGCTAAACTTGATGATGAAGACAACACTCATATAAGCACTCGAATAGCTGGGACCTACGGATATATGGCTCCCGAATATGCCATGCATGGTTATTTGACAGATAAAGCAGATGTTTATAGTTTTGGAATTGTTGCCTTGGAAATTGTTAGTGGAAAGAGTAACACAATCCGCCGACCAAAGGAAGGAACGATGTGTCTTCTTGATTCGGCACGTGTGTTGAAAGTAGAAGGCAAATTAATTGAGTTAGTTGATGAAAGACTAGGGTCAAATTTCAATGAAGAAGAAGTGATGGTGATGATTAAGGTGGCTCTTCTGTGCACCAACGCCACTTCCAATCTTAGACCCACCATGTCTTCAGTTGTTAGCATGCTTGAAGGCAAAAGTCTTGTTTCAGAATTTACTTCAAATACAAGTGAAGTAATGGATGAAATGAAGTTAGAAGCAATGAGACAGTACTATAATCAAACAACACAAAAGGAGTTAACGGTGCCACAAAGTCAAAGTTTATCAATTGAATGGCCTTCATCTTCATCTTCTGTTGATCTCTATCCCATTAACCTTAATTCGTCAAACTTGGAGACAAAGAGATTAAAAGATTCTATATAA	2985	0.3725	MKTTTFSEFLLLSLLASYFASLHGSTTDPKEVQALRDIAKTLGKSGWDFNVDPCNTSVEWTLPGPYDSKQVPRNNVSCDCSIDKFCHVTSIDIVGDSLQGNLPRELVGLPYIQNIDLSLNYLNGTVPEEWATLKYLNKIALLGNRLSGPFPEVLTQITTLTTLVLESNNFYGNLPPALGHLPQLERLLLSSNNFTGEWPQTFSNLTTLKDVRLGDNQFSGKIPKFIEKWINLQILDITGSGLEGPFPSGFSFPQSLIKLILRSCNINDKIPEYIGNLTNLKLLDLSYNKLRGKIPNMEGLINATNIYLTGNLLTGSRNEWRLPEKKIKSIDLSYNNFSNDNERAPRCQDQKKNLFASFSSENNSGPYLCIMDKCRKTFYFFHINCGGNEEITIGDTTYDRDLYVQSEEVAYSSMSNWAISNTGFLLDANNEKEARSSYQVQNISRLSMSDDEAKLYSTARISPLSLTYYGFCLANGNYTVKLHFAEIMFTDDNTYKSLGRRVFDVYIQGKRVLKDFNIAKIAQGAGKAHIENFTASVSNSTLEIRFYWAGKGSTGIPKRSVYGPLISAISVTSDFKPPSPPSHKRVATSIILIVVAISIILILVAGILWWRFCLKSNNSLAKEFKDLDLKTGVFTLRQIKVATNNFNISNKIGEGGFGPVYKGILWDGTMIAVKLLSSKSKQGNREFINEIGLISALQHPCLVKLYGCCVDGDQLLLVYEYLENNNLARALFGNEEHSLKLNWATRQKICIGIARGLAFLHEESRLKIVHRDIKATNVLLDKELNPKISDFGLAKLDDEDNTHISTRIAGTYGYMAPEYAMHGYLTDKADVYSFGIVALEIVSGKSNTIRRPKEGTMCLLDSARVLKVEGKLIELVDERLGSNFNEEEVMVMIKVALLCTNATSNLRPTMSSVVSMLEGKSLVSEFTSNTSEVMDEMKLEAMRQYYNQTTQKELTVPQSQSLSIEWPSSSSSVDLYPINLNSSNLETKRLKDSI	994

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun5g02426	994	SUPERFAMILY	L domain-like	78	340	-	-
	Viun5g02426	994	Gene3D	Ribonuclease Inhibitor	28	253	IPR032675	-
	Viun5g02426	994	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED	17	958	-	-
	Viun5g02426	994	SMART	serkin_6	646	891	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun5g02426	994	Gene3D	Ribonuclease Inhibitor	254	369	IPR032675	-
	Viun5g02426	994	FunFam	Leucine-rich repeat receptor protein kinase EMS1	150	249	-	-
	Viun5g02426	994	Pfam	Protein tyrosine and serine/threonine kinase	647	917	IPR001245	GO:0004672\|GO:0006468
	Viun5g02426	994	CDD	STKc_IRAK	652	919	-	-
	Viun5g02426	994	FunFam	probable LRR receptor-like serine/threonine-protein kinase At1g53430	615	721	-	-
	Viun5g02426	994	ProSiteProfiles	Leucine-rich repeat profile.	279	301	IPR001611	GO:0005515
	Viun5g02426	994	Gene3D	Phosphorylase Kinase; domain 1	611	721	-	-
	Viun5g02426	994	FunFam	Putative LRR receptor-like serine/threonine-protein kinase	722	929	-	-
	Viun5g02426	994	Gene3D	Transferase(Phosphotransferase) domain 1	722	935	-	-
	Viun5g02426	994	Pfam	Malectin domain	381	569	IPR021720	-
	Viun5g02426	994	Gene3D	-	377	575	-	-
	Viun5g02426	994	ProSiteProfiles	Protein kinase domain profile.	646	927	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun5g02426	994	FunFam	Putative leucine-rich repeat receptor-like serine/threonine-protein kinase	378	574	-	-
	Viun5g02426	994	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	768	780	IPR008271	GO:0004672\|GO:0006468
	Viun5g02426	994	SUPERFAMILY	Protein kinase-like (PK-like)	629	930	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun5g02426	Viun-Chr5	34170379	34194896	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun5g02426	18	970	Receptor kinase-like Gene Family	AT1G53420	51.623	0.0	913

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Viun5g02426		PK_Tyr_Ser-Thr	2.1e-46	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun5g02426	-		-	gmx:100785451	1092.03