Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g02425 ATGAGCATGAAGAAGATGACTCCCTCTCAGCTTCTCTTCCTTTCACTGCTTCTGCCATGCTTCACATCGCTTGCCTTTGGTCAAAATACCACTGACCCAGCTGAAGTGGAAGCTCTGAAAGATATAGGCAACACCCTTGGTAATAAGAATTGGGACACAACCATAGATCCATGCAGTAATAAACCTCCGTGGAGTGTAACTATGGAGAAAGACAAAGCCAACTATGTCAGATGCAATTGTTCTATCCCCACCGACACCTACTGCCATGTTGTTTCAATAACGCTGAAAGCACAAAATCTTACTGGCACGCTCCCATCTGAATTGACAGGGCTACCTCACCTTGAAGAAATTGACCTCACTCGCAATTATCTTAATGGGACAATACCTATTGCCTGGGGCTCCTCCAAACTTCGTATTATTTCTCTTCTTGGAAATCGACTTACTGGTCCCATCCCAAAAGAGATAGGAAACATCACAACCCTCGAAAGTTTGGTGCTGGAATTTAATCAATTCACTGGAAATATTACACCGGAACTTGGGAACCTTTCTCACCTTCAAAGATTGCATCTTACCTCCAACAATTTTACCGGAGAACTTCCCGAAACTTTGGCTAAACTTACATTATTGAGAGAACTTCGTCTTAATGACAATAACTTCTCAGGAAGCATACCCAGTTTTATTCAAAGATGGACAAATCTTGAAATATTAGAAATTCAAGGTAGTGGTTTAAGTGGGCCAATTCCTTCTCAAATTTCATTGCTGCACAACTTATATGACTTGAGAATTACTGACTTGATTAATGGATCAGATTCTACTTTCCCACAAATTAATAATATGACAAATTTGAAGACACTGATACTAAGGAACTGCCAAATTAATGACGAATTACCTTCATATCTTGGGTACATGAAAGGCATTGACACTACTATGCAAACCTTAGACCTAAGCTTTAACAAATTACGCGGAAATATTCCAGAGAACATTGGAAACCTATCAAAACTGTCACACGTATATTTCACTGGAAACCAACTTACTGGACCTCTACCTAAGTGGGTAGCTGCAGGAGGTAAACCTATAGATCTTTCATATAACAACTTCACTGATAAAAACTCCTCCATGGCATGCCAAGAGAATAAAGAAGTGAATTGGTTTGCCAGCTTCCCAATGAGCCAAAATGGACCTATTACCTGTCTGAGTAGAGAAAACTGTACAAGACTCTTTGACTCATTCCACATAAATTGTGGTGGTGAACAACAAAGAAGCAATGAAAATATTATGTATGATGAGGACTTTTATCCATCAGGGGCAGCAACATCTGAAAAGCCCAAAGAAAATTGGGCATTTAGCAATACCGGTCATTTCTTAGGTGGTCATAATGAACTAGCCTATATCCAGCAAAGTCAAAATACACTTTCTATGCCTGATTCTGTATTGTATCAGACTGCACGTGTATCCCCCATTTCCTTGACTTATTATGGAATGTGTCTAAAAAATGGAGACTACATAGTATCACTACATTTTGCAGAGATCATGTTCACTGATGATAACTCATATAGCAGTCTTGGAAGACGTATATTTGATGTTTACATTCAGGGAAAGCTAGAATTGAAGGATTTCAATATTGCAAATGAAGCAGGAGGAGTTGGTAAGAACATTACAAAAAGAATTTCAACTATTGTTACTAATAACTCTTTAGAAATTCGTTTTTATTGGGCTGGAAAAGGAACAACTTCTATCCCATATAGATCAGTGTATGGCCCACTTATATCAGCTATATCTGTCACTCATGTAAACACTACAGTTCCCAACAACAGGCATCCAAACATAAGTGGCATAACTATAGGGGTTGTAATTGGGATAGTTCTTTCTGCAATGGTATTTGTCATCCTTATTTTACTTGGTTGGAGATTGCATTTTGCGAAAAGAAATTCATTGGCAAAAGAGTTAAACCATTTAAATTTGCAAGTGGGTTTGTTTACTATGCGTCAAATCAAAGTTGCAACAAATAACTTTGATATTTCCAATAAGATTGGAGAAGGAGGCTTTGGTCCTGTCTACAAGGGTACTTTATCAGATGACACAATAATAGCAGTTAAAAAGCTTTCATCAAAGTCTAAGCAAGGGAACCGTGAATTTATAAATGAGATAGGGTTGATTTCAGCTTTGCAACACCCTTGTCTTGTTAAGCTTTACGGTTGTTGTGTTGAGGGTGATCAGTTGTTGTTGGTATATGAATATATGGAAAATAATAGCCTTGCACATGCTTTATTTAGAAATGAAGAATCTTGTTTGCAATTAGATTGGCCAACCAGGTATAAGATTTGTGTTGGTATTGCTAGAGGTTTAGTATTCCTACATGAAGAATCAAGATTAAAAGTTGTTCACAGAGACATAAAGGCTACTAATGTGTTATTAGACAAAGATCTAAACCCAAAGATATCTGATTTTGGTCTTGCAAAGCTTGATGATGAAGACAACACTCACATAAGCACAAGAATAGCTGGGACTTATGGATATATGGCTCCAGAATATGCCATGCATGGTTATTTAACTGATAAAGCAGATATCTATAGTTTTGGAGTAGTTATCTTGGAAATTGTAACTGGAAACAGCAATACCATCCCTCGACCCAAACAAGAAGCATTGCATCTTTTAGATTGGGCCCATTTCTTGAAAGAGAAAGGAAATCTGATGGAGCTTGTTGATAGAAGATTAGGATCAAATTTCAATGAAAAAGAGGTTATGATGATGATAAAAGTAGGTCTTTTATGCACAAATGCCATTGCAAACCTTAGGCCTTCCATGTCAACAGTGCTCGGCATGCTCGAAGGAAAAACTGTGATTCCAGAATTTATTTCAGATTCATCTGAAATAATGGATGAAAATAAGCTAGAGGCTATGAGACAATTTTACTCTCAAATGGAAGAAAATCAGAGCAATGAAACACATACAAATCATAGTTCATCGAAAGATGGGTCATGGATTGCTTCGCCTTCATCAACTTCAGATTTATATCCTCTCCATACTGATTCTTCTTATTGGGAAAAAAGAAATTAG 3057 0.3736 MSMKKMTPSQLLFLSLLLPCFTSLAFGQNTTDPAEVEALKDIGNTLGNKNWDTTIDPCSNKPPWSVTMEKDKANYVRCNCSIPTDTYCHVVSITLKAQNLTGTLPSELTGLPHLEEIDLTRNYLNGTIPIAWGSSKLRIISLLGNRLTGPIPKEIGNITTLESLVLEFNQFTGNITPELGNLSHLQRLHLTSNNFTGELPETLAKLTLLRELRLNDNNFSGSIPSFIQRWTNLEILEIQGSGLSGPIPSQISLLHNLYDLRITDLINGSDSTFPQINNMTNLKTLILRNCQINDELPSYLGYMKGIDTTMQTLDLSFNKLRGNIPENIGNLSKLSHVYFTGNQLTGPLPKWVAAGGKPIDLSYNNFTDKNSSMACQENKEVNWFASFPMSQNGPITCLSRENCTRLFDSFHINCGGEQQRSNENIMYDEDFYPSGAATSEKPKENWAFSNTGHFLGGHNELAYIQQSQNTLSMPDSVLYQTARVSPISLTYYGMCLKNGDYIVSLHFAEIMFTDDNSYSSLGRRIFDVYIQGKLELKDFNIANEAGGVGKNITKRISTIVTNNSLEIRFYWAGKGTTSIPYRSVYGPLISAISVTHVNTTVPNNRHPNISGITIGVVIGIVLSAMVFVILILLGWRLHFAKRNSLAKELNHLNLQVGLFTMRQIKVATNNFDISNKIGEGGFGPVYKGTLSDDTIIAVKKLSSKSKQGNREFINEIGLISALQHPCLVKLYGCCVEGDQLLLVYEYMENNSLAHALFRNEESCLQLDWPTRYKICVGIARGLVFLHEESRLKVVHRDIKATNVLLDKDLNPKISDFGLAKLDDEDNTHISTRIAGTYGYMAPEYAMHGYLTDKADIYSFGVVILEIVTGNSNTIPRPKQEALHLLDWAHFLKEKGNLMELVDRRLGSNFNEKEVMMMIKVGLLCTNAIANLRPSMSTVLGMLEGKTVIPEFISDSSEIMDENKLEAMRQFYSQMEENQSNETHTNHSSSKDGSWIASPSSTSDLYPLHTDSSYWEKRN 1018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g02425 1018 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g53420 32 266 - -
Viun5g02425 1018 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 640 746 - -
Viun5g02425 1018 ProSiteProfiles Protein kinase domain profile. 671 952 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g02425 1018 Gene3D Ribonuclease Inhibitor 198 267 IPR032675 -
Viun5g02425 1018 SUPERFAMILY Protein kinase-like (PK-like) 655 961 IPR011009 -
Viun5g02425 1018 FunFam Putative LRR receptor-like serine/threonine-protein kinase 747 954 - -
Viun5g02425 1018 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 18 979 - -
Viun5g02425 1018 Pfam Malectin domain 410 592 IPR021720 -
Viun5g02425 1018 Gene3D - 409 599 - -
Viun5g02425 1018 Gene3D Ribonuclease Inhibitor 268 386 IPR032675 -
Viun5g02425 1018 Gene3D Ribonuclease Inhibitor 34 197 IPR032675 -
Viun5g02425 1018 Gene3D Phosphorylase Kinase; domain 1 635 746 - -
Viun5g02425 1018 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 407 597 - -
Viun5g02425 1018 ProSitePatterns Serine/Threonine protein kinases active-site signature. 793 805 IPR008271 GO:0004672|GO:0006468
Viun5g02425 1018 MobiDBLite consensus disorder prediction 975 1018 - -
Viun5g02425 1018 MobiDBLite consensus disorder prediction 975 1008 - -
Viun5g02425 1018 Gene3D Transferase(Phosphotransferase) domain 1 747 955 - -
Viun5g02425 1018 CDD STKc_IRAK 677 944 - -
Viun5g02425 1018 SMART serkin_6 671 942 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g02425 1018 Pfam Leucine Rich repeat 182 198 IPR001611 GO:0005515
Viun5g02425 1018 Pfam Leucine Rich repeat 279 295 IPR001611 GO:0005515
Viun5g02425 1018 SUPERFAMILY L domain-like 81 368 - -
Viun5g02425 1018 Pfam Protein tyrosine and serine/threonine kinase 673 883 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g02425 Viun-Chr5 34038535 34067262 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g02425 26 974 Receptor kinase-like Gene Family AT1G53420 52.495 0.0 956
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Viun5g02425 PK_Tyr_Ser-Thr 1.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g02425 - - gmx:100785451 1404.04