Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g02424 ATGTCGGATTCTGCATTGTATCAGACTGCACGTGTATCCCCTATTTCTTTGACTTATTATGGAATGTGTCTGGAAAATGGAGACTACACGGTATTGCTGCATTTTGCAGAGATCATGTTCACTGATGATAACACATATCGCAGTCTGGGAAGACGAATATTTGATGTTTATATTCAGGGAAAGCTAGAATTGAAGGATTTCAATATTGCAAATGAAGCAGGAGGAGTTGGAAAGAATTTAAAAAGAAAATTTTCAACCACTGTTAGTAATAAGTCTTTAGAGATTCGTTTTTACTGGGCTGGAAAGGGAACAACTGCTATCCCAGAAAAATCAGTATATGGACCTCTTATATCAGCTATATCTGTGACTCGTGATTCAGGTGGCATGGCTATAGCGGTTATAATTGGGATAGCAATTTCTGCAATAGTATTTGTCATCCTTGTTGTATTTGGCTGGAGACTTCATATTCGGAAAAGAAATTCATTGGCAAAAGAGTTAAAGCATTTAAATTTGCAAGTGGGTTTGTTTACTATGCGTCAAATCAAAGTTGCAACAAATAACTTTGATATTGCTAACAAGATTGGAGAAGGAGGCTTTGGTCCGGTCTACAAGGGTACTTTATCGGATGACACAATAATTGCAGTTAAGATGCTTTCATCAAAGTCTAAGCAAGGGAACCGTGAGTTTATAAATGAAATAGGGTTGATTTCAGCTTTGCAACACCCTTGTCTTGTTAAACTTTACGGTTGTTGTGTTGAGGGAGATCAATTGTTGTTGGTATACGAATATCTGGAAAACAATAGCCTTGCACGCGCTTTATTTAGACAAGAAGAATCCAGTTTGCAATTGGATTGGCCAACCAGGTATAAGATTTGTGTTGGTATTGCTAGAGGCTTGGCTTTCCTACATGAAGAATCAAGATTAAAAGTTGTTCATAGAGACATAAAGGCTACTAATGTGTTGTTAGACAAAGACTTGAATCCAAAAATATCTGATTTTGAAATTTGGTATGATTATGGATTTCAATTATGCAGTGGGTATATGGCTCCAGAATATGCCATGCATGGTTATTTAACTGATAAAGCAGATGTTTATAGTTTTGGAGTGGTTGCCTTGGAAATTGTAACTGGAAAGAGTAATACCATCTCTCGACCCAAGCAAGAAGCATTAAATCTTTTAGATTGGGCAAATTTATTGAAAGAGAAAGGGAATCTGATGGAGCTTGTTGACAGAAGGTTAGGTTCAAATTTCGATGAAAAAGAGGTTATGATGATGATAAGAGTGGGTCTTTTGTGCACAAATGCCACTTCAAATCTTAGGCCTACCATGTCATCAGTTCTTAGCATGCTTGAAGGAAAAATTGTGATTCCAGAATTTATTTCAGATCCATCTGAAATAATGGATGAAAAGAAGCTAGAGTCTATGAGACAATATTATTCTCAAATGGAAGAAAATGAGAGCAATGAAACACATACATATCATAGTTCATCAAAAGATGGGCCATGGACTGCTTCATCGTCATCAGCTGTACACCTATATCCTCTCCATATTGATTCTTCTTATTGGGAGAAAAGAAATTAG 1581 0.365 MSDSALYQTARVSPISLTYYGMCLENGDYTVLLHFAEIMFTDDNTYRSLGRRIFDVYIQGKLELKDFNIANEAGGVGKNLKRKFSTTVSNKSLEIRFYWAGKGTTAIPEKSVYGPLISAISVTRDSGGMAIAVIIGIAISAIVFVILVVFGWRLHIRKRNSLAKELKHLNLQVGLFTMRQIKVATNNFDIANKIGEGGFGPVYKGTLSDDTIIAVKMLSSKSKQGNREFINEIGLISALQHPCLVKLYGCCVEGDQLLLVYEYLENNSLARALFRQEESSLQLDWPTRYKICVGIARGLAFLHEESRLKVVHRDIKATNVLLDKDLNPKISDFEIWYDYGFQLCSGYMAPEYAMHGYLTDKADVYSFGVVALEIVTGKSNTISRPKQEALNLLDWANLLKEKGNLMELVDRRLGSNFDEKEVMMMIRVGLLCTNATSNLRPTMSSVLSMLEGKIVIPEFISDPSEIMDEKKLESMRQYYSQMEENESNETHTYHSSSKDGPWTASSSSAVHLYPLHIDSSYWEKRN 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g02424 526 SUPERFAMILY Protein kinase-like (PK-like) 172 472 IPR011009 -
Viun5g02424 526 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 4 486 - -
Viun5g02424 526 SMART serkin_6 188 450 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g02424 526 Gene3D Phosphorylase Kinase; domain 1 150 263 - -
Viun5g02424 526 ProSitePatterns Serine/Threonine protein kinases active-site signature. 310 322 IPR008271 GO:0004672|GO:0006468
Viun5g02424 526 Gene3D - 1 126 - -
Viun5g02424 526 CDD STKc_IRAK 194 452 - -
Viun5g02424 526 Pfam Protein tyrosine and serine/threonine kinase 190 447 IPR001245 GO:0004672|GO:0006468
Viun5g02424 526 Pfam Malectin domain 2 120 IPR021720 -
Viun5g02424 526 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g29720 264 454 - -
Viun5g02424 526 Gene3D Transferase(Phosphotransferase) domain 1 264 458 - -
Viun5g02424 526 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 1 125 - -
Viun5g02424 526 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 157 263 - -
Viun5g02424 526 ProSiteProfiles Protein kinase domain profile. 188 460 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g02424 Viun-Chr5 33968639 33971707 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g02424 5 510 Receptor kinase-like Gene Family AT1G07650 58.015 0.0 590
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Viun5g02424 PK_Tyr_Ser-Thr 5.6e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g02424 - - vun:114184648 1038.1