Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g02422 ATGAGCTTCTATCTACTTTTCCATCTTTGGTTTCTTGCCTTTTCTTTTATCTCTTCTATGGCCTGGGGAGCTACTTTGCCCGAAGATGAAGTGGAAGTAATGAAAGAGATAGGTAAAAGAGTCGGGAAGAAGGATTGGGATTTCAATGTAGATCCATGCAGTGGACAAAGAAATTGGACTTCATCTATTCAAGTCAAGGGATTTGAAAATGCTGTCACTTGCAATTGCCTTTTTGCCAATGCTACTATCTGCCACGTCGTCAGCATTGTTCTGAAGTCACAAAATCTGTCGGGCACACTCCCAAGTGAACTAGTGAGATTGCCATACCTCCAAGAAATTGACCTCACAAGAAACTACCTTAATGGTACAATACCTCCACAATGGGGCTCCACCAACCTTGTCAACATATCCATTCTTGGAAATAGGGTAACAGGTCCAATACCAAAAGAACTAGGAAACATCACCACACTGAAAAGTTTGGTCCTGGAATTCAATCAATTATCTGGTGAGCTTCCTCCAGAGCTTGGGAATCTCCCTCAACTTGAAAGATTGCTTCTTACCTCCAACTATTTTACGGGAAATTTACCTGCAACATTTGCTAGGCTCACTACACTAAAGCAAATTCGACTTGGTGACAATCAGTTCTCTGGAACTTTACCAGATTTCATTCAGAGATGGAGAAGTCTGGAGAGGCTGTATGAACTTATCTTGTTGTGCAATTTGAATATATTTGTTGATTGGTTTATTAGGTCAATTGTTTTTAACTTTAACAGGGTGATGCAAGGGAGTGGTTTCAGTGGGCCAATTCCTTCTGGAATTTCATTTTTGAACAACCTCACTGATTTGAGAATTAGTGACTTGAAAGGACCAGATTCTACATTCCCCCAACTTAAAAACTTAACAAATTTGCAGACACTAATACTGAGGAGTTGCAATCTTATAGGAATGGTTCCTGAATACCTCGGAGATTTTACGGGCTTACGATCATTAGATCTCAGCTTTAACAAATTAACGGGACCGATTCCAAGAACCTTGGGTGGCCTAAACGATATAAATATATTATATTTAACCGGAAACCGTTTCACTGGACCACTACCCAACTGGATAGATAGGCCAGACTACACTGATCTCTCATACAACAATTTGAGCATCCAAAACCCAGAGCAATTGACCTGTCAACAGGGAAGTGTGAACTTGTTTGCATCATCATTGAAGGGAAATAATGACTTGGGAATCATTCCATGTCTAGGGAAGATTAACTGTCCTAAAACCTGGTACTCTCTCCATGTAAATTGTGGAGGGAAGTTAATTTCTAATGGAAACATAAAGTATGATGATGACTCACAAGAAGCTGGACCAGCAAGGTTTCGTCAAACAGGATCAAATTGGGTATTCAGCAACACTGGTCATTTCTTTGATAGTGGTCGAGTAGATTACTATACTTGGTCTAACACAACAAAGCTTGATATGAACAATGGCGAATTATATATGGATGCACGTGTCTCTGCCCTTTCTCTCATATATTATGCCTTCTGCATGGGAAACGGAAGCTACACAATAAGCCTTCATTTTGCAGAAATAATGTTCACTCATGATCAAACCTATAGCAGCCTTGGAAGGCGCATATTTGACATATATGTTCAGAGAAAGTTGGTGCTGAAGGATTTCAATATTGCAAAAGAAGCAGGAGGAGTTGGTAAAGCAATCATTAAAAAGTTCACTACTTTTGTGAATAGTAGTACCTTAGAGATTCGGTTGCAGTGGGCTGGGAAAGGAACAACTGGTATACCGTTTGGATCAGTTCATGGTCCTCTTATATCAGCTATATCAGTTGATCCTGATTTTACACCACAAGAGGAAGATAAAGATGGTGTACCTAAGCATTATGTTGTTGGAATTGTAGTTACTGGAGCACTTGTAATCATCATAATATTTGGCGTAGCTTGGTGGAGAGGATGTTTCAGGAGAAAGGTGTCTTTAGAAAAAGAACTAATGGGTGTAGATTTCCAAACTAGCTTATTTAGCTTACGACAAATCAAAGCTGCAACTAAAAACTTTGATATTAACTTCAAGATTGGAGAAGGAGGTTTTGGACCTGTTTACAAGGGTGTTCTCTCAGATGGCACGATAATAGCAGTTAAACAACTTTCTTCTAAATCGAGACAAGGAAATCGTGAGTTTATAAACGAGATTGGTATGATTTCTGCTTTGAAACATCCTTCTCTAGTTAAACTTTATGGTTGTTGCATGGAGGGAGATCAGTTGATGCTGATATATGAATACATGGAAAACAACAGTCTTGCTCGTGCTTTATTTGCACCAGAAAAATCTCAGTTGAAGTTGGATTGGTCAACAAGGCAAAGGATATGTGTTGGTATTGCTAGAGGTTTGGCTTATCTTCATGGAGAGTCAAGGCTAAAGATAGTTCATAGAGACATCAAGGCCACTAATGTGTTATTAGACAAAGATCTCAACCCAAAGATTTCTGATTTTGGTTTGGCTAAACTTGATGAAGAGGGCTCCACACACATAACTACCAGAGTAGCTGGCACCTATGGATATATGGCTCCAGAATATGCCATGCATGGTTATTTAACTGATAAAGCAGATGTGTATAGTTTTGGCATTGTTGCACTAGAAATTATTAGTGGAAAAAGTAACACCATGAACTGGCCAAAGGAAGGATGTTTCTCTCTCGTTGATTTCGTGCATCTCTTGAGAGAACAAGGTGATCTAATGAACCTAGTTGATGAGAGGTTGGGTAATGATTTCAAAAGAGAAGAAGTAGTGATAATGATTAATGTGGGTCTATTATGCACACAAGTTTCTCCAATTCATAGACCCACAATGGCTTCAGTTGTATGCATGCTTGAAGGAAAAAGTGATGTTGAAGAGGTGGTGTTAGATACAAGTGAAGTATTAGATGGAAAGAAGTTGGAGATGAAACAATATTACAATATGAGAGAGAAAAACAAGACTCGTGAAATACCAGAAGAGAGCATCTCAATGGGTGAAACTTCAGCATTTATGTCTGATACAGATCTACACTCTATCAACATGGATTCTTCTTTCCTAAAGAAAAAGTTAATAGATATATAA 3099 0.3875 MSFYLLFHLWFLAFSFISSMAWGATLPEDEVEVMKEIGKRVGKKDWDFNVDPCSGQRNWTSSIQVKGFENAVTCNCLFANATICHVVSIVLKSQNLSGTLPSELVRLPYLQEIDLTRNYLNGTIPPQWGSTNLVNISILGNRVTGPIPKELGNITTLKSLVLEFNQLSGELPPELGNLPQLERLLLTSNYFTGNLPATFARLTTLKQIRLGDNQFSGTLPDFIQRWRSLERLYELILLCNLNIFVDWFIRSIVFNFNRVMQGSGFSGPIPSGISFLNNLTDLRISDLKGPDSTFPQLKNLTNLQTLILRSCNLIGMVPEYLGDFTGLRSLDLSFNKLTGPIPRTLGGLNDINILYLTGNRFTGPLPNWIDRPDYTDLSYNNLSIQNPEQLTCQQGSVNLFASSLKGNNDLGIIPCLGKINCPKTWYSLHVNCGGKLISNGNIKYDDDSQEAGPARFRQTGSNWVFSNTGHFFDSGRVDYYTWSNTTKLDMNNGELYMDARVSALSLIYYAFCMGNGSYTISLHFAEIMFTHDQTYSSLGRRIFDIYVQRKLVLKDFNIAKEAGGVGKAIIKKFTTFVNSSTLEIRLQWAGKGTTGIPFGSVHGPLISAISVDPDFTPQEEDKDGVPKHYVVGIVVTGALVIIIIFGVAWWRGCFRRKVSLEKELMGVDFQTSLFSLRQIKAATKNFDINFKIGEGGFGPVYKGVLSDGTIIAVKQLSSKSRQGNREFINEIGMISALKHPSLVKLYGCCMEGDQLMLIYEYMENNSLARALFAPEKSQLKLDWSTRQRICVGIARGLAYLHGESRLKIVHRDIKATNVLLDKDLNPKISDFGLAKLDEEGSTHITTRVAGTYGYMAPEYAMHGYLTDKADVYSFGIVALEIISGKSNTMNWPKEGCFSLVDFVHLLREQGDLMNLVDERLGNDFKREEVVIMINVGLLCTQVSPIHRPTMASVVCMLEGKSDVEEVVLDTSEVLDGKKLEMKQYYNMREKNKTREIPEESISMGETSAFMSDTDLHSINMDSSFLKKKLIDI 1032
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g02422 1032 ProSiteProfiles Protein kinase domain profile. 686 967 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g02422 1032 CDD STKc_IRAK 692 959 - -
Viun5g02422 1032 Gene3D Ribonuclease Inhibitor 249 424 IPR032675 -
Viun5g02422 1032 Pfam Malectin domain 427 609 IPR021720 -
Viun5g02422 1032 Pfam Leucine rich repeat 301 361 IPR001611 GO:0005515
Viun5g02422 1032 Gene3D - 425 613 - -
Viun5g02422 1032 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g53420 27 236 - -
Viun5g02422 1032 Pfam Protein kinase domain 690 888 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g02422 1032 Gene3D Transferase(Phosphotransferase) domain 1 762 972 - -
Viun5g02422 1032 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 425 614 - -
Viun5g02422 1032 Gene3D Ribonuclease Inhibitor 41 195 IPR032675 -
Viun5g02422 1032 Gene3D Phosphorylase Kinase; domain 1 653 761 - -
Viun5g02422 1032 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 655 761 - -
Viun5g02422 1032 SMART serkin_6 686 957 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g02422 1032 FunFam Putative LRR receptor-like serine/threonine-protein kinase 762 969 - -
Viun5g02422 1032 SUPERFAMILY Protein kinase-like (PK-like) 669 958 IPR011009 -
Viun5g02422 1032 Gene3D Ribonuclease Inhibitor 196 242 IPR032675 -
Viun5g02422 1032 ProSitePatterns Serine/Threonine protein kinases active-site signature. 808 820 IPR008271 GO:0004672|GO:0006468
Viun5g02422 1032 SUPERFAMILY RNI-like 95 366 - -
Viun5g02422 1032 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 11 983 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g02422 Viun-Chr5 33944397 33956973 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g02422 17 987 Receptor kinase-like Gene Family AT1G53420 52.648 0.0 996
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Viun5g02422 Pkinase 4.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g02422 - - gmx:100786496 1729.92