Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g02413 ATGAAGATTCAGTGCAACGTTTGTGAGGCTGCGGAGGCTAAGGTTCTGTGTTGTGCTGATGAGGCTGCTCTGTGTTGGGAATGTGATGAAAAGGTTCATGCGGCTAACAAGCTTGCTAACAAGCACCAGAGAGTTCCTCTTTCTACCTCTTCTTCTCATATGCCCAAATGTGACATTTGCCAGGAAGCATTAGGCTACTTTTTCTGTCTAGAGGATCGAGCTCTGTTCTGCAGAAAATGTGATTTGGCAATACATACAGCAAATGCTTATGTCTCTGGTCATCAGAGGTTTCTTCTCACCGGTGTAAGAGTAGGCCTTGAAGCTACAGAGCCTGGTGCATCCTCATCGTCTTTGAAGTCAGATTCTGGGGAGAAAATTTCTGATACAAAGTCCTCTTCTATCTCTAGAAAGGTTTCCACAGTGCCTCAGAACTCAGATTACAATGAATTGTTGCCTATCGAAGGTGGAGGAGTTGAGGGGTTTCCACCAGCTAAGGAGTCTTTTGGTGGTGGTTCTACAGTTGGAAATATCTCACAGTGGACAATAGATGAATTTATTGGCCTAAACGAGTTCAGTCAGAATTATGATTACATGGAAGAATCAACAAGGGCTGACGGTGGTAAGTTAGGGGATTCCGATTCTCCGGTTTTAAGATCCGGCGACGAGGAAATGGAGGAGGAGGAGTATTTGGAACATGTTCCAGATTCTTCATGGACAGTTCCACAGATCCCTTCACCACCAACAGCTTCTGGGTTACACTGGCCAAAACACCCTCAATATTCATCTGATAGTCTTCTGTTTGTTCCTGACATAAGCTTTTCTCACATGCAACACTCTCAGATCAGTAGTATTTTTTCTAGACGCCGGAGGCACCTTTAA 879 0.4448 MKIQCNVCEAAEAKVLCCADEAALCWECDEKVHAANKLANKHQRVPLSTSSSHMPKCDICQEALGYFFCLEDRALFCRKCDLAIHTANAYVSGHQRFLLTGVRVGLEATEPGASSSSLKSDSGEKISDTKSSSISRKVSTVPQNSDYNELLPIEGGGVEGFPPAKESFGGGSTVGNISQWTIDEFIGLNEFSQNYDYMEESTRADGGKLGDSDSPVLRSGDEEMEEEEYLEHVPDSSWTVPQIPSPPTASGLHWPKHPQYSSDSLLFVPDISFSHMQHSQISSIFSRRRRHL 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g02413 292 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Viun5g02413 292 MobiDBLite consensus disorder prediction 110 155 - -
Viun5g02413 292 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 273 - -
Viun5g02413 292 CDD Bbox1_BBX-like 5 47 - -
Viun5g02413 292 Gene3D Classic Zinc Finger 1 92 - -
Viun5g02413 292 MobiDBLite consensus disorder prediction 202 244 - -
Viun5g02413 292 SMART bboxneu5 52 99 IPR000315 GO:0008270
Viun5g02413 292 SMART bboxneu5 4 47 IPR000315 GO:0008270
Viun5g02413 292 MobiDBLite consensus disorder prediction 110 147 - -
Viun5g02413 292 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Viun5g02413 292 Pfam B-box zinc finger 54 95 IPR000315 GO:0008270
Viun5g02413 292 CDD Bbox1_BBX-like 56 99 - -
Viun5g02413 292 FunFam B-box zinc finger protein 22 1 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g02413 Viun-Chr5 33671976 33675802 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g02413 1 290 C2C2-CO-like Transcription Factor Family AT1G78600 47.706 8.47e-89 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Viun5g02413 zf-B_box 3.1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g02413 - - gmx:100790959 501.516