Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g02404 ATGGTTGGATTCCACAGTGACCATAAGGCCGGGAACAAGTTCAATGCGGCGGCAGTACGGGGCGAGAGGGAAGATGGGAGACCTTTCAAACAAAGGCTTTTGGTGGTGGCCAATAGGCTGCCAGTCTCGGCAATTAGGAAAGGCGAGGATTCGTGGTCTTTGGAGATAAGTGCTGGTGGCCTGGTGAGCGCACTCTTAGGTGTGAAGGCTTTGGAGGCAAGGTGGATAGGTTGGGCTGGAGTTAATGTGCCAGATGAGATTGGACAAAAGGCACTTACTAAAGCTTTGGCTGAAAAGAGGTGTATCCCAGTATTTCTTGATGAAGAGATTGTTCATCAATATTATAATGGCTATTGCAACAATATTCTATGGCCCCTTTTTCATTACCTTGGACTTCCACAAGAAGACCGCCTTGCTACCACACGTAGTTTCCAGTCTCAATTTGAAGCATACCAGAAGGCAAATCAAATGTTTGCCGATGTTGTAAACAAGCACTATGAAGAGGGTGATGTTGTTTGGTGCCATGATTACCATCTTATGTTTCTTCCACAATGCTTAAAGAATTATAACCCTAAAATGAAAGTTGGCTGGTTTCTTCATACCCCATTTCCATCTTCTGAGATTCACAGGACATTGCCTTCTCGTTCAGAGCTTCTGCATGCTGTTCTTGCAGCCGATTTGGTTGGTTTTCACACCTACGACTATGCACGACATTTTGTCAGTGCATGTACCCGCATACTTGGACTTGAGGGAACGCCTGAAGGTGTTGAGAATCAAGGGAAGCTGACTCGAGTAGCAGCATTTCCAATAGGTATCGACTCAGAACGATTCATACGTGCACTTGACCTTCCTCAGGTGAAAGGTCACATTAAAGAATTACAAGAGAGATTTAAAGGGAGAAAGGTTATGTTAGGTGTTGATCGTCTTGATATGATCAAAGGAATCCCTCAAAAAATTCTGGCATTTGAAAAATTTTTGGAAGAGAATCCTGATTGGCGTGATAAAGTTGTTCTGCTTCAAATTGCCGTTCCAACAAGGACAGATGTTCCTGAGTATCAAAAGCTTACAAGCCAGGTCCATGAAATTGTTGGTCGCATTAATGGCAGATTCGGAACACTTGCTACTGTTCCCATACATCACTTGGATTGCTCTCTTGATTTTCATAAACTGTGTGCTTTGTACGCTGTTACGGATGTAGCACTTGTCACCTCTTTAAGGGATGGGATGAATCTTGTAAGTTACGAATTTGTGGCCTGCCAAGATAAAAAGAAAGGGGTTCTCATTCTCAGCGAATTTGCGGGTGCTGCACAGTCACTTGGCGCTGGGGCAATTCTGGTCAACCCTTGGAACATCACAGAAGTTGCTGCTGCAATTGACAAGGCTCTGAATATGAAATCCGAAGAACGAGAGAAGAGACATAAGCATAACTTTAAACATGTAACAACCCACACTGCTCAGGAATGGGCAGAAACTTTTGTGAGTGAACTAAATGATACTATTGATGAGGCACAACTAAGGACAAAACAAGTTCCACCACGGCTCCCGATGGAGACTGCAGTTGAACGTTATTTGCAGTCAAATAATCGGTTGATTATTTTGGGTTTCAATGGAACTCTAACTGTACCAGTTGAGAGAAAAGGTGATCAGTATCAAGAAACGGAACTCACAGTGCATCCAGAACTGAAACAACCCTTGGCAGAACTTTGCAGTGACCCAAAGACCACAGTTGTTGTGCTTAGTGGAAGTGGTAGACCAGTTCTAGATCAAAACTTCAAAGAGTATGACATCTGGCTAGCAGCGGAGAATGGGATGTTTTTAAACCCTTCTAAGGGAGAATGGATGACAACAATGCCAGAGCAACTAAATATGGAATGGGTTGACAGCGTGAAGCATGTTTTTGACTACTTCACAGATAGAACACCTCGATCACATTTTGAAGAAAGGGAAGCTTCACTTGTATGGAGTTACAGACATTCAGATGTTGAGTTTGGAAGACTACAAGCAAGGGACATGTTGCAGCATCTCTGGACAGGGCCAATTTCTAATGCTTCAGTTGAAGTTGTTCAAGGGAGCCGGTCTGTTGAGGTGCGAGCTGCTAATGTTACAAAGGGAGCAGCCATTGACCGTATTCTAGGGGAGATAGTCCATAGTAAATCCATGACAACACCAATTGATTACGTTTTGTGTATAGGACATTTTCTAACAAAGCAGGATGAAGATATATATGCGTTTTTTGAGCCAGAGTTACCTTCTATTGGTGTGGGTCTTCCACGAAGTAAGGTAACAGAAGGAGTTAAGTTTCCTGCGGAGAGGATATCATCGTTGAAGATTCCAGCTAGTAAAAATGGAGCAGCAAAATCATCCCAAAATAAGGGACAACGTGTTGTGCCAAATTCTGAGAGGAAAACAAATAATCATGTGTGCCGTGCGCCACGTCGTCCAGCTCCTGAAAAGATATCTTGGAATGTCCTTGACCTGAAGAAGGAGAATTACTTTTCTTGTGCTGTTGGAAGAACACAAACCAATGCTCGGTATACGCTTGGATCACCCGATGAAGTTGTTTCATTTCTGAACGAACTAGTCAACGCATCTCCGTACTCTTATGTCTAG 2610 0.4333 MVGFHSDHKAGNKFNAAAVRGEREDGRPFKQRLLVVANRLPVSAIRKGEDSWSLEISAGGLVSALLGVKALEARWIGWAGVNVPDEIGQKALTKALAEKRCIPVFLDEEIVHQYYNGYCNNILWPLFHYLGLPQEDRLATTRSFQSQFEAYQKANQMFADVVNKHYEEGDVVWCHDYHLMFLPQCLKNYNPKMKVGWFLHTPFPSSEIHRTLPSRSELLHAVLAADLVGFHTYDYARHFVSACTRILGLEGTPEGVENQGKLTRVAAFPIGIDSERFIRALDLPQVKGHIKELQERFKGRKVMLGVDRLDMIKGIPQKILAFEKFLEENPDWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLATVPIHHLDCSLDFHKLCALYAVTDVALVTSLRDGMNLVSYEFVACQDKKKGVLILSEFAGAAQSLGAGAILVNPWNITEVAAAIDKALNMKSEEREKRHKHNFKHVTTHTAQEWAETFVSELNDTIDEAQLRTKQVPPRLPMETAVERYLQSNNRLIILGFNGTLTVPVERKGDQYQETELTVHPELKQPLAELCSDPKTTVVVLSGSGRPVLDQNFKEYDIWLAAENGMFLNPSKGEWMTTMPEQLNMEWVDSVKHVFDYFTDRTPRSHFEEREASLVWSYRHSDVEFGRLQARDMLQHLWTGPISNASVEVVQGSRSVEVRAANVTKGAAIDRILGEIVHSKSMTTPIDYVLCIGHFLTKQDEDIYAFFEPELPSIGVGLPRSKVTEGVKFPAERISSLKIPASKNGAAKSSQNKGQRVVPNSERKTNNHVCRAPRRPAPEKISWNVLDLKKENYFSCAVGRTQTNARYTLGSPDEVVSFLNELVNASPYSYV 869
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g02404 869 Gene3D - 533 757 IPR023214 -
Viun5g02404 869 SUPERFAMILY HAD-like 529 861 IPR036412 -
Viun5g02404 869 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 26 861 IPR001830 GO:0003824|GO:0005992
Viun5g02404 869 CDD GT20_TPS 32 497 IPR001830 GO:0003824|GO:0005992
Viun5g02404 869 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like 279 481 - -
Viun5g02404 869 Pfam Glycosyltransferase family 20 32 497 IPR001830 GO:0003824|GO:0005992
Viun5g02404 869 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 24 278 - -
Viun5g02404 869 Gene3D Glycogen Phosphorylase B; 24 278 - -
Viun5g02404 869 Gene3D - 619 699 - -
Viun5g02404 869 NCBIfam trehalose-phosphatase 528 743 IPR003337 GO:0003824|GO:0005992
Viun5g02404 869 MobiDBLite consensus disorder prediction 780 804 - -
Viun5g02404 869 NCBIfam alpha,alpha-trehalose-phosphate synthase (UDP-forming) 32 497 IPR012766 GO:0003825|GO:0005992
Viun5g02404 869 CDD HAD_TPP 530 762 - -
Viun5g02404 869 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 31 500 - -
Viun5g02404 869 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 619 699 - -
Viun5g02404 869 MobiDBLite consensus disorder prediction 780 811 - -
Viun5g02404 869 Pfam Trehalose-phosphatase 552 757 IPR003337 GO:0003824|GO:0005992
Viun5g02404 869 Gene3D Glycogen Phosphorylase B; 279 481 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g02404 Viun-Chr5 33401666 33424367 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g02404 22 864 Trehalose Biosynthesis Gene Families AT1G78580 78.696 0.0 1403
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g02404 K16055 - gmx:100789554 1585.08