Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g02342 ATGAGGAAGGCCTTGATTATAGCCTTTTCCATAACCATATGCTTCATCGCTTTTGTGATATCCAAGATTGTTATTTCAGTTCTCCTCTACAAAAGATGGAGAAGAAAACAGATGATCCATGAAGAAGGTTATACAGGAGGGAAGATAGTAATATTTAGGTCTTCAGTGCTTAAATCTCTCACAGCTGATGCGATCTTAAAGAAGACACAGAAACTGAACAACAAGGACATCATAGGGTCAGGTGGTTATGGTGTGGTTTATGGACTCAAACTAGATGAATCCACAGCCTTGGCAGTAAAAAGACTAAACCGTGGAACTGCAGAAAGAGATAAAGGCTTTGAGAGAGAGTTGGAAGCAATGGCAGACATAAAACACCGCAACATTGTGACTCTTCATGGATATTACACTGCACAACACTACAATCTTCTCATATATGAGCTAATGCCCAATGGAAGTTTGGACTCCTTTTTGCATGGGAGATCAAGGGACAAGAAGGTTTTGGATTGGGCAACCAGATATAGAATAGCTGCAGGTGCAGCTAGAGGAATATCATATCTTCATCATGATTGCATCCCTCACATTATCCACAGAGACATCAAGTCAAGTAACATATTGTTGGATGAAAATATGGATGCTCGAGTTTCTGATTTTGGATTAGCCACTTTGATGCAACCAAATAAAACTCATGTCTCAACATTTGTGGCTGGAACTTTTGGATACGTGGCACCTGAATATTTTGACACAGGAAGAGCAACACTGAAAGGGGATGTTTACAGCTTTGGAGTTGTTTTACTGGAGCTTTTAACTGGGAAGAAACCCAATGATGAAGCATTTATGGAAGAGGGAACAATGCTTGTCACATGGGTACCAAGTTCAATTTGA 882 0.4002 MRKALIIAFSITICFIAFVISKIVISVLLYKRWRRKQMIHEEGYTGGKIVIFRSSVLKSLTADAILKKTQKLNNKDIIGSGGYGVVYGLKLDESTALAVKRLNRGTAERDKGFERELEAMADIKHRNIVTLHGYYTAQHYNLLIYELMPNGSLDSFLHGRSRDKKVLDWATRYRIAAGAARGISYLHHDCIPHIIHRDIKSSNILLDENMDARVSDFGLATLMQPNKTHVSTFVAGTFGYVAPEYFDTGRATLKGDVYSFGVVLLELLTGKKPNDEAFMEEGTMLVTWVPSSI 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g02342 293 ProSitePatterns Protein kinases ATP-binding region signature. 78 100 IPR017441 GO:0005524
Viun5g02342 293 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 9 292 - -
Viun5g02342 293 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672|GO:0006468
Viun5g02342 293 Gene3D Transferase(Phosphotransferase) domain 1 148 293 - -
Viun5g02342 293 Gene3D Phosphorylase Kinase; domain 1 34 147 - -
Viun5g02342 293 Pfam Protein kinase domain 74 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g02342 293 SUPERFAMILY Protein kinase-like (PK-like) 53 280 IPR011009 -
Viun5g02342 293 ProSiteProfiles Protein kinase domain profile. 72 293 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g02342 293 SMART serkin_6 72 289 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g02342 293 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 148 293 - -
Viun5g02342 293 FunFam Receptor-like serine/threonine-protein kinase 43 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g02342 Viun-Chr5 31875826 31878176 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g02342 3 289 Receptor kinase-like Gene Family AT2G35620 47.586 4.23e-85 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIa Viun5g02342 Pkinase 3.4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g02342 - - gmx:100305410 514.998