Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g02341 ATGAGGAAGGCCTTGATTATAGCCTTTTCCATAACCATATGCTTCATCGCTTTTGTGATATCCAAGATTGTTATTTCAGTTCTCCTCTACAAAAGATGGAGAAGAAAACAGATGATCCATGAAGAAGGTTATACAGGAGGGAAGATAGTAATATTTAGGTCTTCAGTGCTTAAATCTCTCACAGCTGATGCGATCTTAAAGAAGACACAGAAACTGAACAACAAGGACATCATAGGGTCAGGTGGTTATGGTGTGGTTTATGGACTCAAACTAGATGAATCCACAGCCTTGGCAGTAAAAAGACTAAACCGTGGAACTGCAGAAAGAGATAAAGGCTTTGAGAGAGAGTTGGAAGCAATGGCAGACATAAAACACCGCAACATTGTGACTCTTCATGGATATTACACTGCACAACACTACAATCTTCTCATATATGAGCTAATGCCCAATGGAAGTTTGGACTCCTTTTTGCATGGGAGATCAAGGGACAAGAAGGTTTTGGATTGGGCAACCAGATATAGAATAGCTGCAGGTGCAGCTAGAGGAATATCATATCTTCATCATGATTGCATCCCTCACATTATCCACAGAGACATCAAGTCAAGTAACATATTGTTGGATGAAAATATGGATGCTCGAGTTTCTGATTTTGGATTAGCCACTTTGATGCAACCAAATAAAACTCATGTCTCAACATTTGTGGCTGGAACTTTTGGATACGTGGCACCTGAATATTTTGACACAGGAAGAGCAACACTGAAAGGGGATGTTTACAGCTTTGGAGTTGTTTTACTGGAGCTTTTAACTGGGAAGAAACCCAATGATGAAGCATTTATGGAAGAGGGAACAATGCTTGTCACATGGGTTAAGGCTGTTGTTCGAGAGAAGAAGGAGGAGTTAGTACTTGATAGTAGCTTACGATGTTGTTGTTCAATGGAAGAGGTAAATAAGGTGTTCAGCATTGCAATGATGTGTCTTGAACCAGATCCTTTGAATAGGCCAACCATGGGTGATGTTGTCAAAATGCTTGACCAAACAGAAGAAGATAAACTTGTTACAGAATCCTGA 1068 0.4007 MRKALIIAFSITICFIAFVISKIVISVLLYKRWRRKQMIHEEGYTGGKIVIFRSSVLKSLTADAILKKTQKLNNKDIIGSGGYGVVYGLKLDESTALAVKRLNRGTAERDKGFERELEAMADIKHRNIVTLHGYYTAQHYNLLIYELMPNGSLDSFLHGRSRDKKVLDWATRYRIAAGAARGISYLHHDCIPHIIHRDIKSSNILLDENMDARVSDFGLATLMQPNKTHVSTFVAGTFGYVAPEYFDTGRATLKGDVYSFGVVLLELLTGKKPNDEAFMEEGTMLVTWVKAVVREKKEELVLDSSLRCCCSMEEVNKVFSIAMMCLEPDPLNRPTMGDVVKMLDQTEEDKLVTES 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g02341 355 ProSitePatterns Protein kinases ATP-binding region signature. 78 100 IPR017441 GO:0005524
Viun5g02341 355 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 10 348 - -
Viun5g02341 355 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672|GO:0006468
Viun5g02341 355 Gene3D Phosphorylase Kinase; domain 1 34 147 - -
Viun5g02341 355 Gene3D Transferase(Phosphotransferase) domain 1 148 354 - -
Viun5g02341 355 ProSiteProfiles Protein kinase domain profile. 72 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g02341 355 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 148 355 - -
Viun5g02341 355 SUPERFAMILY Protein kinase-like (PK-like) 53 343 IPR011009 -
Viun5g02341 355 SMART serkin_6 72 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g02341 355 FunFam Receptor-like serine/threonine-protein kinase 43 147 - -
Viun5g02341 355 Pfam Protein kinase domain 74 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g02341 Viun-Chr5 31875654 31878172 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g02341 3 345 Receptor kinase-like Gene Family AT2G35620 44.509 7.19e-94 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIa Viun5g02341 Pkinase 1.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g02341 - - ahf:112703495 546.199