LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun5g02328	ATGAGGTTTTTGGGTCACGCAGCTCAATGGAGAAGCGCAGCGAAGGAAGCGTTGGACCGCACAAGCATCACTGTGAATTTCCTGTGTTGGCTTCACTTCACCAGCAACTACCTCTGTTCCCCGTTTCACGCGTATGGGGTTAGCATGCTCCCCACTCTCAACGTCACCGGCGACATCCTCCTCGCCGACCATCTCTCTCCGCTACTCGGGAACGTCGGCCACGGCGACTTGGTTCTCGTTCGGTCCCCTCTAAACCCTAAGATCAGGTTGACGAAGCGCGTCGTGGCCGTGGAAGGGGACACCGTCACTTACTTCGACCCGTTGCACTCTGAAGCTTCTCAAGTTGCAGTGGTGCCAAAGGGGCATGTTTGGATTCAAGGGGATAACATTTATGCCTCCCGTGACTCACGCCATTTCGGTCCTGTCCCATATGGTCTCATAGAAGGAAAAGTGTTTTTCCGGGTATGGCCACCTGGTAGCATTGGATTACTCGATTGA	498	0.5422	MRFLGHAAQWRSAAKEALDRTSITVNFLCWLHFTSNYLCSPFHAYGVSMLPTLNVTGDILLADHLSPLLGNVGHGDLVLVRSPLNPKIRLTKRVVAVEGDTVTYFDPLHSEASQVAVVPKGHVWIQGDNIYASRDSRHFGPVPYGLIEGKVFFRVWPPGSIGLLD	165

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun5g02328	165	Gene3D	Umud Fragment, subunit A	35	161	-	-
	Viun5g02328	165	Pfam	Signal peptidase, peptidase S26	113	156	IPR019533	GO:0004252\|GO:0006465
	Viun5g02328	165	Pfam	Signal peptidase, peptidase S26	24	104	IPR019533	GO:0004252\|GO:0006465
	Viun5g02328	165	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	90	102	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Viun5g02328	165	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	37	53	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Viun5g02328	165	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	118	137	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Viun5g02328	165	PANTHER	PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED	9	164	-	-
	Viun5g02328	165	CDD	S26_SPase_I	40	151	IPR019533	GO:0004252\|GO:0006465
	Viun5g02328	165	FunFam	Inner membrane protease subunit 1	35	163	-	-
	Viun5g02328	165	SUPERFAMILY	LexA/Signal peptidase	37	164	IPR036286	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun5g02328	Viun-Chr5	31587868	31607161	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun5g02328	49	164	MADS-box Gene Family	AT1G29960	49.573	2.38e-35	118

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun5g02328	K09647		-	cave:132173278	249.98