LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun5g02325	ATGGATTTAGGTTTTCATTCTTGGGAAGACTTTTGGATAGGTAATATCGATCTTCTGTGCATCCTTCCAAGAGAATGGTGTACTAACAAGCTTCGAAAAGAAGAGACCGAAAGAAAGAGAAAGATGAGGTTTTTGGGTCACGCAGCTCAATGGAGAAGCGCAGCGAAGGAAGCGTTGGACCGCACAAGCATCACTGTGAATTTCCTGTGTTGGCTTCACTTCACCAGCAACTACCTCTGTTCCCCGTTTCACGCGTATGGGGTTAGCATGCTCCCCACTCTCAACGTCACCGGCGACATCCTCCTCGCCGACCATCTCTCTCCGCTACTCGGGAACGTCGGCCACGGCGACTTGGTTCTCGTTCGGTCCCCTCTAAACCCTAAGATCAGGTTGACGAAGCGCGTCGTGGCCGTGGAAGGGGACACCGTCACTTACTTCGACCCGTTGCACTCTGAAGCTTCTCAAGTTGCAGTGGTGCCAAAGGGGCATGTTTGGATTCAAGGGGATAACATTTATGCCTCCCGTGACTCACGCCATTTCGGTCCTGTCCCATATGGTCTCATAGAAGGAAAAGTGTTTTTCCGGGAGTTGTGCATAGTCAACATCGCATAG	612	0.5098	MDLGFHSWEDFWIGNIDLLCILPREWCTNKLRKEETERKRKMRFLGHAAQWRSAAKEALDRTSITVNFLCWLHFTSNYLCSPFHAYGVSMLPTLNVTGDILLADHLSPLLGNVGHGDLVLVRSPLNPKIRLTKRVVAVEGDTVTYFDPLHSEASQVAVVPKGHVWIQGDNIYASRDSRHFGPVPYGLIEGKVFFRELCIVNIA	203

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun5g02325	203	CDD	S26_SPase_I	81	192	IPR019533	GO:0004252\|GO:0006465
	Viun5g02325	203	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	78	94	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Viun5g02325	203	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	159	178	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Viun5g02325	203	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	131	143	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Viun5g02325	203	SUPERFAMILY	LexA/Signal peptidase	78	195	IPR036286	-
	Viun5g02325	203	PANTHER	PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED	50	195	-	-
	Viun5g02325	203	Gene3D	Umud Fragment, subunit A	76	200	-	-
	Viun5g02325	203	FunFam	Inner membrane protease subunit 1	76	202	-	-
	Viun5g02325	203	Pfam	Signal peptidase, peptidase S26	65	146	IPR019533	GO:0004252\|GO:0006465
	Viun5g02325	203	Pfam	Signal peptidase, peptidase S26	155	194	IPR019533	GO:0004252\|GO:0006465

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun5g02325	Viun-Chr5	31587863	31607161	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun5g02325	90	195	MADS-box Gene Family	AT1G29960	49.533	2.06e-31	109

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun5g02325	K09647		-	cave:132173278	232.646