Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g02243 ATGGCGAAACCTGGGCGAGGTCGTCGCTCTCCCTCCGGTTCAGTCTCCGCCTCTTCCTCTCGCTCCTCATCCCCCTCCTCTTCTCGCTCCTCTGGCTCGCACTCTCGCTCCCGCTCCCGCTCTCCCTCTCGCTCCAGATCTTTCTCATCGTCGTCCTCCTCTCCCTCCCGCAGCTCCCGCAGCCGCAGCCCTCCGCCCCAGAGGCGCAGAAGTCCCGCTGCAGCAACAGCAGCAGCAGCTAGGCGTGGTCGGTCTCCTCCACCTCAGTCAAAGAGAGCTTCACCTCCCCCGAGGAAACCTTCTCCTGTACGAGAATCACTTGTTCTTCATGTGGAAAAGCTCAGCAGAAACGTCAATGAGGGTCATTTGAAGGAAATTTTCAGTAACTTTGGTGAGGTTGTAAGTGTGGAGTTGGCAATGGATCGAACTGTCAATCTTCCAAAGGGATATGGATATGTGCAGTTCAAGACGAGAGAGGATGCTGAAAAAGCATTACTATACATGGATGGTGCCCAAATAGATGGCAATGTCATCAAGGCAAGATTTACTTTACCTCCTAGACAGAAAGTTTCACCACCCCCAAAGGCTTCTATTGCTGCTCCAAAGAGAGACACCCCCAGGACTGATAATGCTATTGCAGATGTTGACAAGGATGGACCAAAGCGTCAGAGAGAATCTCCTCGAAGAAAGCCTCCCTCGCCACGGAGGAGATCTCCTGTACCTCGAAGAGCTGGATCTCCAAGACGACCAGATTCTCCTCGCCGCCGTGCAGATTCTCCTGTTCGGCGCCGATTAGACTCTCCTTATCGTCGTGGAGGAGACACCCCTCCTAGGAGGCGGCCTGTGTCTCCTGGAAGAGGTCGTTCTCCATCTCCACCAAGACGCCTTAGATCCCCTGCAAGGGTCTCACCTAGAAGGATGCGTGGAAGCCCTGGGCGGCGACGCTCACCTCCTCCTCCTCCTCGGCGCCGATCACCACCACCTAGGCGAGCTCGTAGTCCTCCTAGAAGGTCTCCAATTGGTCGTAGACGCACTCGCTCTCCAATACGTAGGTCGGCACGTTCACGGTCAAGGTCTTTCTCACCTCGCAGAGGTAGGCCACCTGTAAGGCGTGGGAGGTCATCATCGTACTCAGATTCACCAAGTCCACGCAAGGTTTCCAGGAGATCAAAGAGTCGTAGCCCAAGAAGGCCTTTGAGAGGAAGAGGCAGTAGCAATAGTAGCAGCAGCAGTTCACCACCGCCAGCTCGCAAACCATAG 1260 0.5532 MAKPGRGRRSPSGSVSASSSRSSSPSSSRSSGSHSRSRSRSPSRSRSFSSSSSSPSRSSRSRSPPPQRRRSPAAATAAAARRGRSPPPQSKRASPPPRKPSPVRESLVLHVEKLSRNVNEGHLKEIFSNFGEVVSVELAMDRTVNLPKGYGYVQFKTREDAEKALLYMDGAQIDGNVIKARFTLPPRQKVSPPPKASIAAPKRDTPRTDNAIADVDKDGPKRQRESPRRKPPSPRRRSPVPRRAGSPRRPDSPRRRADSPVRRRLDSPYRRGGDTPPRRRPVSPGRGRSPSPPRRLRSPARVSPRRMRGSPGRRRSPPPPPRRRSPPPRRARSPPRRSPIGRRRTRSPIRRSARSRSRSFSPRRGRPPVRRGRSSSYSDSPSPRKVSRRSKSRSPRRPLRGRGSSNSSSSSSPPPARKP 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g02243 419 MobiDBLite consensus disorder prediction 228 243 - -
Viun5g02243 419 SUPERFAMILY RNA-binding domain, RBD 94 190 IPR035979 GO:0003676
Viun5g02243 419 Gene3D - 6 191 IPR012677 -
Viun5g02243 419 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 107 185 IPR000504 GO:0003723
Viun5g02243 419 PANTHER RIBONUCLEIC ACID BINDING PROTEIN S1 265 389 - -
Viun5g02243 419 MobiDBLite consensus disorder prediction 184 419 - -
Viun5g02243 419 CDD RRM_RNPS1 109 181 IPR034201 -
Viun5g02243 419 MobiDBLite consensus disorder prediction 1 105 - -
Viun5g02243 419 MobiDBLite consensus disorder prediction 247 277 - -
Viun5g02243 419 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 111 179 IPR000504 GO:0003723
Viun5g02243 419 MobiDBLite consensus disorder prediction 207 227 - -
Viun5g02243 419 SMART rrm1_1 108 181 IPR000504 GO:0003723
Viun5g02243 419 MobiDBLite consensus disorder prediction 399 419 - -
Viun5g02243 419 FunFam Serine/arginine-rich splicing factor SR45 3 192 - -
Viun5g02243 419 MobiDBLite consensus disorder prediction 299 370 - -
Viun5g02243 419 MobiDBLite consensus disorder prediction 11 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g02243 Viun-Chr5 29672416 29677261 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g02243 109 182 Eukaryotic Initiation Factors Gene Family AT2G23350 33.784 9.57e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g02243 K14325 - gmx:100783566 255.373