Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g02222 ATGGGTAAGCAACAGAAAGTAGCCATGGAAATTGCAGTCCAAGAGTTCAATAGCTTCACTTGTTCAAACCTGGAACTGAATATACAAAATTCAAAGGGGATTTCGGCTACAACAATTGCCAGTGCTTTGAATCTCACACAGAATGAGCAAGTGCTTGCCCTCATTGGAACAATAACACACAATGAAGCGACAATTGCAAGCGAGTTAAATGACACCATAAAGAATATTCCTATATTGTCTCTAACTTCTCCCACAATCAACATAGAGATGTTATCTCCACAATTGCCACACTTCATCCAATTTGGCAATGATATCAAGATTCACATGCAATGCATTTCAGCCATTGTAGGAGAATTTAGATGGAGAAAGGTGACAACAATTTATGAACTCAGTAACACGTTTTCCTCTGATCCAGGGATGCTACTTGACCTCTCCTATTCTCTTAGACTTGTTGGTTCTGAGATTGATAATCATTTAGCATTGCCTTCCTTGTCCTCCCTCTCAGACCCAAAATCTACCATTGAAAATGGGCTTAAAAAGCTTAAAAGAAAAAGTAATAGGGTCTTTTTGATTGTGAAATCTTCTTTGGAGATGGCTAACATAATATTTGAGAAAGCAAAACAAATGGATTTGATGGAAAAAGATTCAGTTTGGGTTATCCCAGATGGGGTTGCTAGCCTTCTTGATTCGGTTAACTCAACTTCTATCGTTAACATGCAAGGAGTTATTGGATTTAAGACACATTTCATTGAAACAAGTGAGAAATTTAGGAGATTCAAGTTTAAATTTCGAAGGAGGTTTGCATTAGAGTTTGCTGAAGAAGATAATATTAATCCGAGTTTCTTTGCACTACAATCTTACGATGCAACTTGGGTTGTTGCTCATGCTACAAGGAAATTACAATGGAATTTTAGCCTTGAACAATCATCCAGAACTAATCTCTCCAACAATAGAAAAATACAACAATCACCAATCTTCAGCATAATTAATGTGATAGGTAAAAGTTACAGAGAGTTGGGATTATGGTCTCTAGAACTAGGTTTGACTAAAAACCTTGTTACACAACAGGAAACAGAGATAATGAAGACACATGGTTCTTCCACTAAAGTTTTGAGTACAATTTATTGGCCAGGTGGCTTGCAGTTTGTTCCTAAGGGATGGACTTATAGCACTAAGGAAAAGACATTGCAAATAGCAGTTCCTGCAAATGGTGTCTTTCATCAATTTGTAAATGTGACATATAATCAAAAGACAAATAACACTTCTATCACTGGTTTCTCAATTGATGTCTTCAAAGCAGCCATTAATACTTTACCTTATGACTTGAAATACACGTTTGTTCCCTTCAATGGTTCTTATGATGAAATGGTAGAGAAAGTCTATAATAAGACATTGGATGCTGCTGTCGGAGATACATCAATAATGGCTTATAGATATCATTTAGTGGACTTCTCACAACCATATCTTGAATCTGGCCTGAACATGGTGGTTCCAGAGCAATCAACAAAATCAAAGGAAGCATGGATGTTTCTAGATGCCTTCACGAAAGAGATGTGGTTGATGATGGCAGCATTGCACATTTTTGTTGGATTGGTCATTTGGTTGATTGAGCGACAAGTTAATACAGAACTAAAAGGATTGGGATCCATGCTTTGGTTTTTAGTCACTGTAATATTCTATGCACACAGAGAACCAATTAGAAGCCCTTTGGCTCGAACTGTAATGGCGCCATGGTTATTTGTCATCCTCATTGTAACTAGTACTTTCACAGCAAGTTTGACTTCCATGATGACTTTTTCACAACTAGTACCATCTGTTTTAGATATTCAAACCCTTCAACAAAAAAATTCCCCAGTTGGTTGTAATGGAAATTCATTCATTGTGAAGTATTTGACCGAGGTACTAAAGTTCAAGCCAGAGAACATTAGAAAAATTTACTCTGTAAGTGATTACCCTGAGGCCTTTCAAAATAAGTATATTGAAGCCGCTTTCCTTAGTACGCCTCATACAAAGGTATTTCTGGCAAAGTACTCATGTAGGGGTCTCATCAAAGCAGGGAACACTTTCAAGCTTGGTGGCATAGGTTTTGTGGGTCTCTCTCCCTCATTATTTCTATTTTATGATATTCTTGGTACTAGTGAAAAATAG 2148 0.3706 MGKQQKVAMEIAVQEFNSFTCSNLELNIQNSKGISATTIASALNLTQNEQVLALIGTITHNEATIASELNDTIKNIPILSLTSPTINIEMLSPQLPHFIQFGNDIKIHMQCISAIVGEFRWRKVTTIYELSNTFSSDPGMLLDLSYSLRLVGSEIDNHLALPSLSSLSDPKSTIENGLKKLKRKSNRVFLIVKSSLEMANIIFEKAKQMDLMEKDSVWVIPDGVASLLDSVNSTSIVNMQGVIGFKTHFIETSEKFRRFKFKFRRRFALEFAEEDNINPSFFALQSYDATWVVAHATRKLQWNFSLEQSSRTNLSNNRKIQQSPIFSIINVIGKSYRELGLWSLELGLTKNLVTQQETEIMKTHGSSTKVLSTIYWPGGLQFVPKGWTYSTKEKTLQIAVPANGVFHQFVNVTYNQKTNNTSITGFSIDVFKAAINTLPYDLKYTFVPFNGSYDEMVEKVYNKTLDAAVGDTSIMAYRYHLVDFSQPYLESGLNMVVPEQSTKSKEAWMFLDAFTKEMWLMMAALHIFVGLVIWLIERQVNTELKGLGSMLWFLVTVIFYAHREPIRSPLARTVMAPWLFVILIVTSTFTASLTSMMTFSQLVPSVLDIQTLQQKNSPVGCNGNSFIVKYLTEVLKFKPENIRKIYSVSDYPEAFQNKYIEAAFLSTPHTKVFLAKYSCRGLIKAGNTFKLGGIGFVGLSPSLFLFYDILGTSEK 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g02222 715 SMART GluR_14 395 708 IPR001320 GO:0015276|GO:0016020
Viun5g02222 715 SUPERFAMILY Periplasmic binding protein-like II 369 697 - -
Viun5g02222 715 FunFam Glutamate receptor 108 277 - -
Viun5g02222 715 Pfam Ligand-gated ion channel 516 626 IPR001320 GO:0015276|GO:0016020
Viun5g02222 715 Gene3D - 396 506 - -
Viun5g02222 715 FunFam Glutamate receptor 507 640 - -
Viun5g02222 715 FunFam Glutamate receptor 391 506 - -
Viun5g02222 715 SUPERFAMILY Periplasmic binding protein-like I 2 387 IPR028082 -
Viun5g02222 715 Gene3D - 1 102 - -
Viun5g02222 715 Gene3D - 507 649 - -
Viun5g02222 715 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 2 697 IPR015683 -
Viun5g02222 715 Pfam Bacterial extracellular solute-binding proteins, family 3 414 684 IPR001638 -
Viun5g02222 715 Pfam Receptor family ligand binding region 6 301 IPR001828 -
Viun5g02222 715 CDD GluR_Plant 394 697 - -
Viun5g02222 715 Gene3D - 105 269 - -
Viun5g02222 715 Gene3D - 271 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g02222 Viun-Chr5 28668891 28673082 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g02222 42 696 Ion Channels AT5G11210 33.006 2.37e-112 357
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g02222 - - gmx:100777873 1059.67