Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g02221 ATGGGTAAGCAACAGAAAGTAGCCATGGAAATTGCAGTCCAAGAGTTCAATAGCTTCACTTGTTCAAACCTGGAACTGAATATACAAAATTCAAAGGGGATTTCGGCTACAACAATTGCCAGTGCTTTGAATCTCACACAGAATGAGCAAGTGCTTGCCCTCATTGGAACAATAACACACAATGAAGCGACAATTGCAAGCGAGTTAAATGACACCATAAAGAATATTCCTATATTGTCTCTAACTTCTCCCACAATCAACATAGAGATGTTATCTCCACAATTGCCACACTTCATCCAATTTGGCAATGATATCAAGATTCACATGCAATGCATTTCAGCCATTGTAGGAGAATTTAGATGGAGAAAGGTGACAACAATTTATGAACTCAGTAACACGTTTTCCTCTGATCCAGGGATGCTACTTGACCTCTCCTATTCTCTTAGACTTGTTGGTTCTGAGATTGATAATCATTTAGCATTGCCTTCCTTGTCCTCCCTCTCAGACCCAAAATCTACCATTGAAAATGGGCTTAAAAAGCTTAAAAGAAAAAGTAATAGGGTCTTTTTGATTGTGAAATCTTCTTTGGAGATGGCTAACATAATATTTGAGAAAGCAAAACAAATGGATTTGATGGAAAAAGATTCAGTTTGGGTTATCCCAGATGGGGTTGCTAGCCTTCTTGATTCGGTTAACTCAACTTCTATCGTTAACATGCAAGGAGTTATTGGATTTAAGACACATTTCATTGAAACAAGTGAGAAATTTAGGAGATTCAAGTTTAAATTTCGAAGGAGGTTTGCATTAGAGTTTGCTGAAGAAGATAATATTAATCCGAGTTTCTTTGCACTACAATCTTACGATGCAACTTGGGTTGTTGCTCATGCTACAAGGAAATTACAATGGAATTTTAGCCTTGAACAATCATCCAGAACTAATCTCTCCAACAATAGAAAAATACAACAATCACCAATCTTCAGCATAATTAATGTGATAGGTAAAAGTTACAGAGAGTTGGGATTATGGTCTCTAGAACTAGGTTTGACTAAAAACCTTGTTACACAACAGGAAACAGAGATAATGAAGACACATGGTTCTTCCACTAAAGTTTTGAGTACAATTTATTGGCCAGGTGGCTTGCAGTTTGTTCCTAAGGGATGGACTTATAGCACTAAGGAAAAGACATTGCAAATAGCAGTTCCTGCAAATGGTGTCTTTCATCAATTTGTAAATGTGACATATAATCAAAAGACAAATAACACTTCTATCACTGGTTTCTCAATTGATGTCTTCAAAGCAGCCATTAATACTTTACCTTATGACTTGAAATACACGTTTGTTCCCTTCAATGGTTCTTATGATGAAATGGTAGAGAAAGTCTATAATAAGACATTGGATGCTGCTGTCGGAGATACATCAATAATGGCTTATAGATATCATTTAGTGGACTTCTCACAACCATATCTTGAATCTGGCCTGAACATGGTGGTTCCAGAGCAATCAACAAAATCAAAGGAAGCATGGATGTTTCTAGATGCCTTCACGAAAGAGATGTGGTTGATGATGGCAGCATTGCACATTTTTGTTGGATTGGTCATTTGGTTGATTGAGCGACAAGTTAATACAGAACTAAAAGGATTGGGATCCATGCTTTGGTTTTTAGTCACTGTAATATTCTATGCACACAGAGAACCAATTAGAAGCCCTTTGGCTCGAACTGTAATGGCGCCATGGTTATTTGTCATCCTCATTGTAACTAGTACTTTCACAGCAAGTTTGACTTCCATGATGACTTTTTCACAACTAGTACCATCTGTTTTAGATATTCAAACCCTTCAACAAAAAAATTCCCCAGTTGGTTGTAATGGAAATTCATTCATTGTGAAGTATTTGACCGAGGTACTAAAGTTCAAGCCAGAGAACATTAGAAAAATTTACTCTGTAAGTGATTACCCTGAGGCCTTTCAAAATAAGTATATTGAAGCCGCTTTCCTTAGTACGCCTCATACAAAGGTATTTCTGGCAAAGTACTCATGTAGGGGTCTCATCAAAGCAGGGAACACTTTCAAGCTTGGTGGCATAGGTATTTCCAAAGGGTTCCAATCTAGCTGTCGACATATCTGA 2124 0.3729 MGKQQKVAMEIAVQEFNSFTCSNLELNIQNSKGISATTIASALNLTQNEQVLALIGTITHNEATIASELNDTIKNIPILSLTSPTINIEMLSPQLPHFIQFGNDIKIHMQCISAIVGEFRWRKVTTIYELSNTFSSDPGMLLDLSYSLRLVGSEIDNHLALPSLSSLSDPKSTIENGLKKLKRKSNRVFLIVKSSLEMANIIFEKAKQMDLMEKDSVWVIPDGVASLLDSVNSTSIVNMQGVIGFKTHFIETSEKFRRFKFKFRRRFALEFAEEDNINPSFFALQSYDATWVVAHATRKLQWNFSLEQSSRTNLSNNRKIQQSPIFSIINVIGKSYRELGLWSLELGLTKNLVTQQETEIMKTHGSSTKVLSTIYWPGGLQFVPKGWTYSTKEKTLQIAVPANGVFHQFVNVTYNQKTNNTSITGFSIDVFKAAINTLPYDLKYTFVPFNGSYDEMVEKVYNKTLDAAVGDTSIMAYRYHLVDFSQPYLESGLNMVVPEQSTKSKEAWMFLDAFTKEMWLMMAALHIFVGLVIWLIERQVNTELKGLGSMLWFLVTVIFYAHREPIRSPLARTVMAPWLFVILIVTSTFTASLTSMMTFSQLVPSVLDIQTLQQKNSPVGCNGNSFIVKYLTEVLKFKPENIRKIYSVSDYPEAFQNKYIEAAFLSTPHTKVFLAKYSCRGLIKAGNTFKLGGIGISKGFQSSCRHI 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g02221 707 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 2 701 IPR015683 -
Viun5g02221 707 Pfam Ligand-gated ion channel 516 626 IPR001320 GO:0015276|GO:0016020
Viun5g02221 707 Pfam Receptor family ligand binding region 6 301 IPR001828 -
Viun5g02221 707 FunFam Glutamate receptor 391 506 - -
Viun5g02221 707 FunFam Glutamate receptor 507 640 - -
Viun5g02221 707 SUPERFAMILY Periplasmic binding protein-like I 2 387 IPR028082 -
Viun5g02221 707 Gene3D - 1 102 - -
Viun5g02221 707 Gene3D - 396 506 - -
Viun5g02221 707 Gene3D - 507 649 - -
Viun5g02221 707 SMART GluR_14 395 702 IPR001320 GO:0015276|GO:0016020
Viun5g02221 707 SUPERFAMILY Periplasmic binding protein-like II 369 696 - -
Viun5g02221 707 Pfam Bacterial extracellular solute-binding proteins, family 3 414 683 IPR001638 -
Viun5g02221 707 Gene3D - 284 395 - -
Viun5g02221 707 Gene3D - 105 269 - -
Viun5g02221 707 FunFam Glutamate receptor 108 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g02221 Viun-Chr5 28668891 28673223 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g02221 42 697 Ion Channels AT5G11210 32.819 6.72e-112 355
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g02221 - - gmx:100777873 1055.82