Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g02162 ATGTCTGTTATCCCAAAACACACTCACTCCTTACAAGAACTCAACCATGAGAAGGAAAGTTGGAAAATCGTTGCAAGAGTTGTAAGGTTATGGTTTGTTGAAGATTACACAAAAGGAAAAACTCCATTTTCCATGGAAATTGTTCTTCAAGACAAAGAGGGTGTCCTAATCCATGCATCTGTTAGACGCACATTGATATACAAATTCCAGTCTGAAATCAAAGAGGATAAGGTTTACACCATTCAATCTTTTAGTGTTTCATGTAATGGTGGTTCTTATAGAACTACAAATCACGCCTATAAGATCAACTTCCAATTTGGAACCAAGGTCAATATGGTTGAAAGTACCTTAGTTCCGAAAACTACAACTTCATACACCCCTTTTTCAACAATCATAGCTGCTGGTTTTGACACAGATTACTTAGTTAATGTCATTGGAATGTTTACTGGTGTTGGAACAGAAAGGGAGCTAGAGAAAGCTGATAAAGTTTCTATTCAAAACTGTATGAACTGTACCAAGATAATTTTTAACTGTAATGGTGAAGATGCAACCAAGTTGAAAAAAATGATGTGGGATAGTACTGAATCTCCTTCTCAACCTCTTACCCAACTTTCTGCTTCTTCTAAAGTTAGCTTAGAAGATGATTTCATTAAGCTGCATCCTAGGAGTTCAATTGAAGGTCTCAAAGATTTTAAACAGGAAAGTACTTTTGTAGTAAAGGCTACTATCAAACATGTGCTAGATCATGATGATTGGTGGTATACAACATGTATCTGCAACAAAGCAGTATATCCTGATTCCAAAATGTATAAACTGAAACTTCGTGTAATTCATACTACAGATTCTACAACTTTTGTTGTATTTGATCGTGATGCAAGTGCAATGTTGAAGAAATCATGCTCTGACATTCTTGACTTACAAGACAAGAACACTACTGCTGGAGACTTGCCTAAAGAGTTTGAAGTCCTAATTGATAAGACCTATCTGTTCAAAGTTGAGTGCAAGAATGATTATAATAGCAAATTTAAACAATCATTCAGAGTTAAAAAAGTTTGCATGGATGAAAAAGTAATTGAAAGCTTTTCTGATGTTGAAATTAAGTCTTTGGATCTATACTCTACAAATGAAGAAGAAAGCAAAGTAAATGAGCGAACAAATCAAATCTCATCTGATTCCATTGCAGAGGATTTGCTAATCAAATTCACAGAAGAATCAAATGATGCTGAGACTCTAAGTGATCATTTGAACAATATAGTATCAAGCCATGTTCCTGCAAAGAATCCTTGA 1287 0.3473 MSVIPKHTHSLQELNHEKESWKIVARVVRLWFVEDYTKGKTPFSMEIVLQDKEGVLIHASVRRTLIYKFQSEIKEDKVYTIQSFSVSCNGGSYRTTNHAYKINFQFGTKVNMVESTLVPKTTTSYTPFSTIIAAGFDTDYLVNVIGMFTGVGTERELEKADKVSIQNCMNCTKIIFNCNGEDATKLKKMMWDSTESPSQPLTQLSASSKVSLEDDFIKLHPRSSIEGLKDFKQESTFVVKATIKHVLDHDDWWYTTCICNKAVYPDSKMYKLKLRVIHTTDSTTFVVFDRDASAMLKKSCSDILDLQDKNTTAGDLPKEFEVLIDKTYLFKVECKNDYNSKFKQSFRVKKVCMDEKVIESFSDVEIKSLDLYSTNEEESKVNERTNQISSDSIAEDLLIKFTEESNDAETLSDHLNNIVSSHVPAKNP 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g02162 428 Gene3D - 215 360 IPR012340 -
Viun5g02162 428 Gene3D - 6 112 IPR012340 -
Viun5g02162 428 Pfam Domain of unknown function DUF223 46 141 IPR003871 -
Viun5g02162 428 CDD RPA1_DBD_C 237 351 IPR047192 -
Viun5g02162 428 CDD RPA1_DBD_A_like 22 110 - -
Viun5g02162 428 SUPERFAMILY Nucleic acid-binding proteins 226 352 IPR012340 -
Viun5g02162 428 SUPERFAMILY Nucleic acid-binding proteins 9 114 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g02162 Viun-Chr5 27585876 27588365 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g02162 3 351 Core DNA Replication Machinery Family AT5G08020 19.908 4.91e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g02162 - - vun:114169438 667.922