Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g02160 ATGTTATTACCAAAAAAGGAAGTAGCAGGATGTGCTTTAGTGAAGATCATGGCCTCTTCTAGCTACTCGAACTCTCCCTGTGCTGCGTGCAAGTTTTTGAGAAGGAAATGCATGCCGGATTGCATTTTTGCTCCATATTTCCCACCAGAAGAGCCTCAAAAGTTTGCGAATGTTCACAAGATATTTGGTGCGAGCAACGTGAGCAAACTCCTGAATGAGGTTCAACCCCATCAAAGGGAGGATGCAGTGAACTCTCTGGCCTATGAAGCTGAGGCACGGATAAAAGATCCTGTTTATGGGTGTGTTGGGGCAATTTCAGTGCTCCAAAGGCAAGTGATTAGGCTCCAAAAGGAACTTGATGCCACAAACGCTGATTTGATCCGCTATACCTGCAATGAAATGCCAACTCAAGATGGGAGAAGAATCGGTGAAGGTGGAGGAGCTTCCTCTCTCGCTCACTCTCCTGGTTATTACTACCCTTCTCCCTGGAACAATGATCCACTTGCGGATGGTTATCACAGAGGTGACAATAATATGTGA 540 0.4593 MLLPKKEVAGCALVKIMASSSYSNSPCAACKFLRRKCMPDCIFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARIKDPVYGCVGAISVLQRQVIRLQKELDATNADLIRYTCNEMPTQDGRRIGEGGGASSLAHSPGYYYPSPWNNDPLADGYHRGDNNM 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g02160 179 Coils Coil 105 125 - -
Viun5g02160 179 ProSiteProfiles LOB domain profile. 25 126 IPR004883 -
Viun5g02160 179 Pfam Lateral organ boundaries (LOB) domain 26 122 IPR004883 -
Viun5g02160 179 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 24 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g02160 Viun-Chr5 27502905 27504557 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g02160 14 129 AS2 family AT3G27650 81.897 1.45e-69 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Viun5g02160 LOB 1.1e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g02160 - - gmx:100306630 345.51