Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g02158 ATGGCCTCTTCTAGCTACTCGAACTCTCCCTGTGCTGCGTGCAAGTTTTTGAGAAGGAAATGCATGCCGGATTGCATTTTTGCTCCATATTTCCCACCAGAAGAGCCTCAAAAGTTTGCGAATGTTCACAAGATATTTGGTGCGAGCAACGTGAGCAAACTCCTGAATGAGGTTCAACCCCATCAAAGGGAGGATGCAGTGAACTCTCTGGCCTATGAAGCTGAGGCACGGATAAAAGATCCTGTTTATGGGTGTGTTGGGGCAATTTCAGTGCTCCAAAGGCAAGTGATTAGGCTCCAAAAGGAACTTGATGCCACAAACGCTGATTTGATCCGCTATACCTGCAATGAAATGCCAACTCAAGATGGGAGAAGAATCGGTGAAGGTGGAGGAGCTTCCTCTCTCGCTCACTCTCCTGGTTATTACTACCCTTCTCCCTGGAACAATGATCCACTTGCGGATGGTTATCACAGAGGTGACAATAATATGTGA 492 0.4695 MASSSYSNSPCAACKFLRRKCMPDCIFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARIKDPVYGCVGAISVLQRQVIRLQKELDATNADLIRYTCNEMPTQDGRRIGEGGGASSLAHSPGYYYPSPWNNDPLADGYHRGDNNM 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g02158 163 Pfam Lateral organ boundaries (LOB) domain 10 106 IPR004883 -
Viun5g02158 163 Coils Coil 89 109 - -
Viun5g02158 163 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Viun5g02158 163 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g02158 Viun-Chr5 27502905 27504954 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g02158 4 113 AS2 family AT3G27650 85.455 1.13e-69 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Viun5g02158 LOB 8.7e-43 No_clan