Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g02153 ATGAGCCAGTGCGTTCCCAGCTGGGACGTCGACGACAACCCTCCACCCCCAAGACTCTCCCTTCGCTCCAACTCCACTTCCACTGCCCCTGATGTCCCCATGTTAGACTACGAGGTTGCGGAGCTGACATGGGAAAATGGCCAACTTTCTATGCATGGCTTAGGGCTACCGCGTGTGCCGGTGAAGGCCCCCACAAGCGCCGCCAATAATAAGTACACATGGGAGAAGCCTCGCGCCGGTGGCACCTTGGAGTCCATAGTCAACCAAGCCACCAGCTTGCCCCACCGTGGCAAGTCAACGCTGAACGGCGACGGCGGCGTGTACGGGAACTTCCTCGTGCCGTGGTTAGACGCCCATGCCGCCACGGCTAATACGGTGACGATGGACGCATTGGTGCCGTGCTCGAAGCGGGAGCAGAGCAAGCAGGGCATGGAGTCCGTCCCCAGCACGTGCATGGTGGGGTGCTCCACACGTGTGGGGTCGTGCTGCGGCAACCACGGTGCCAAGGGACAAGAGATGAGTGGGAGGGATCAGAGCGTGAGTGGCAGTGCCACGTTCGGGAGGGATAGCAAGCACGTGACCCTTGACACGTGCGACAGGGAGCTTGGTGCGGCTTTCACTTCCACCTCTATCAACTCTCTCGACAACACCAGCTCCGCTAAGCACTGCACCAAGACCACCACCGTTGACGACCACGATTCTGTTTCCCACAGTAAACCAGTGACCGATAAAGCTTCGATGTTGGATGAGGTGATAGAATATTTGAAGCAGTTGCAAGCACAGGTGCAGATGATGAATAGAATCAACATGTCATCCATGATGCTGCCATTGACCATGCAACAACAGCTTCAAATGTCTATGATGTCTCCGATGGGCATGGGATTAGGGATGGGAATGGGCATGGGGATGGGAATGGGGATCGACATCAACTCCATGAATCGTGCTAACATCCCTGCCATCCCTCCAGTCCTTCACCCTTCTGCCTTCATGCCCATGGCAGCGTCGTGGGATGCCGCCGCCGCTGCGGCCGGAGGTGGTGACCGATTTCAAGGGAATCCGGCCACCGTCATGCCTGACCCTCTCTCCACACTTTTTGGATGTCAATCACAGCCGATGAACATGGATGCATACAGTAAACTTGCTGCGATGTATCAGCAGCTGCACCAGCCTCCAGTTTCTGGTTCGAAGAACTGA 1194 0.5678 MSQCVPSWDVDDNPPPPRLSLRSNSTSTAPDVPMLDYEVAELTWENGQLSMHGLGLPRVPVKAPTSAANNKYTWEKPRAGGTLESIVNQATSLPHRGKSTLNGDGGVYGNFLVPWLDAHAATANTVTMDALVPCSKREQSKQGMESVPSTCMVGCSTRVGSCCGNHGAKGQEMSGRDQSVSGSATFGRDSKHVTLDTCDRELGAAFTSTSINSLDNTSSAKHCTKTTTVDDHDSVSHSKPVTDKASMLDEVIEYLKQLQAQVQMMNRINMSSMMLPLTMQQQLQMSMMSPMGMGLGMGMGMGMGMGIDINSMNRANIPAIPPVLHPSAFMPMAASWDAAAAAAGGGDRFQGNPATVMPDPLSTLFGCQSQPMNMDAYSKLAAMYQQLHQPPVSGSKN 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g02153 397 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 240 274 IPR036638 GO:0046983
Viun5g02153 397 Gene3D - 210 284 IPR036638 GO:0046983
Viun5g02153 397 MobiDBLite consensus disorder prediction 1 30 - -
Viun5g02153 397 PANTHER TRANSCRIPTION FACTOR PIF3 242 395 IPR044273 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g02153 Viun-Chr5 27348818 27353640 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g02153 1 378 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00050 39.318 5.90e-57 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g02153 - - gmx:100798775 530.406