Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g02152 ATGAGCCAGTGCGTTCCCAGCTGGGACGTCGACGACAACCCTCCACCCCCAAGACTCTCCCTTCGCTCCAACTCCACTTCCACTGCCCCTGATGTCCCCATGTTAGACTACGAGGTTGCGGAGCTGACATGGGAAAATGGCCAACTTTCTATGCATGGCTTAGGGCTACCGCGTGTGCCGGTGAAGGCCCCCACAAGCGCCGCCAATAATAAGTACACATGGGAGAAGCCTCGCGCCGGTGGCACCTTGGAGTCCATAGTCAACCAAGCCACCAGCTTGCCCCACCGTGGCAAGTCAACGCTGAACGGCGACGGCGGCGTGTACGGGAACTTCCTCGTGCCGTGGTTAGACGCCCATGCCGCCACGGCTAATACGGTGACGATGGACGCATTGGTGCCGTGCTCGAAGCGGGAGCAGAGCAAGCAGGGCATGGAGTCCGTCCCCAGCACGTGCATGGTGGGGTGCTCCACACGTGTGGGGTCGTGCTGCGGCAACCACGGTGCCAAGGGACAAGAGATGAGTGGGAGGGATCAGAGCGTGAGTGGCAGTGCCACGTTCGGGAGGGATAGCAAGCACGTGACCCTTGACACGTGCGACAGGGAGCTTGGTGCGGCTTTCACTTCCACCTCTATCAACTCTCTCGACAACACCAGCTCCGCTAAGCACTGCACCAAGACCACCACCGTTGACGACCACGATTCTGTTTCCCACAGTAAACCAGTGGGTGAAAACGGGGACGACGAGAAAAAAAAGAGAGGAAATGGAAAATCGTCGGTGTCTACTAAAAGGAGCAGAGCTGCGGCTATACACAACCAATCTGAAAGGAAAAGGAGGGATAAGATTAACCAAAGAATGAAGACATTGCAAAAGTTGGTCCCAAATTCCAGCAAGACCGATAAAGCTTCGATGTTGGATGAGGTGATAGAATATTTGAAGCAGTTGCAAGCACAGGTGCAGATGATGAATAGAATCAACATGTCATCCATGATGCTGCCATTGACCATGCAACAACAGCTTCAAATGTCTATGATGTCTCCGATGGGCATGGGATTAGGGATGGGAATGGGCATGGGGATGGGAATGGGGATCGACATCAACTCCATGAATCGTGCTAACATCCCTGCCATCCCTCCAGTCCTTCACCCTTCTGCCTTCATGCCCATGGCAGCGTCGTGGGATGCCGCCGCCGCTGCGGCCGGAGGTGGTGACCGATTTCAAGGGAATCCGGCCACCGTCATGCCTGACCCTCTCTCCACACTTTTTGGATGTCAATCACAGCCGATGAACATGGATGCATACAGTAAACTTGCTGCGATGTATCAGCAGCTGCACCAGCCTCCAGTTTCTGGTTCGAAGAACTGA 1362 0.5507 MSQCVPSWDVDDNPPPPRLSLRSNSTSTAPDVPMLDYEVAELTWENGQLSMHGLGLPRVPVKAPTSAANNKYTWEKPRAGGTLESIVNQATSLPHRGKSTLNGDGGVYGNFLVPWLDAHAATANTVTMDALVPCSKREQSKQGMESVPSTCMVGCSTRVGSCCGNHGAKGQEMSGRDQSVSGSATFGRDSKHVTLDTCDRELGAAFTSTSINSLDNTSSAKHCTKTTTVDDHDSVSHSKPVGENGDDEKKKRGNGKSSVSTKRSRAAAIHNQSERKRRDKINQRMKTLQKLVPNSSKTDKASMLDEVIEYLKQLQAQVQMMNRINMSSMMLPLTMQQQLQMSMMSPMGMGLGMGMGMGMGMGIDINSMNRANIPAIPPVLHPSAFMPMAASWDAAAAAAGGGDRFQGNPATVMPDPLSTLFGCQSQPMNMDAYSKLAAMYQQLHQPPVSGSKN 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g02152 453 CDD bHLH_AtPIF_like 265 326 IPR047265 -
Viun5g02152 453 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 265 314 IPR011598 GO:0046983
Viun5g02152 453 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 263 327 IPR036638 GO:0046983
Viun5g02152 453 Coils Coil 271 291 - -
Viun5g02152 453 FunFam transcription factor UNE10 isoform X1 260 325 - -
Viun5g02152 453 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 39 447 IPR031066 -
Viun5g02152 453 MobiDBLite consensus disorder prediction 224 282 - -
Viun5g02152 453 MobiDBLite consensus disorder prediction 168 189 - -
Viun5g02152 453 MobiDBLite consensus disorder prediction 268 282 - -
Viun5g02152 453 Pfam Helix-loop-helix DNA-binding domain 270 315 IPR011598 GO:0046983
Viun5g02152 453 MobiDBLite consensus disorder prediction 172 189 - -
Viun5g02152 453 SMART finulus 271 320 IPR011598 GO:0046983
Viun5g02152 453 MobiDBLite consensus disorder prediction 225 255 - -
Viun5g02152 453 MobiDBLite consensus disorder prediction 1 30 - -
Viun5g02152 453 Gene3D - 260 326 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g02152 Viun-Chr5 27348724 27353640 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g02152 1 434 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00050 50.113 1.95e-102 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun5g02152 HLH 6.9e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g02152 - - vra:106780284 744.191