Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g02149 ATGTCTCTCTGTGAAGTTCCAAACCAAAGCCAGAGCATAAGCGAAGTAAGCCCCCAGAAGGAAAATTGGAATATTATCGCTAGGGTCATTCGTTCATGGTTTGTTCCTGATTTCACTAAACAGAGGTGTCCTTTTTCCATGGAGTTCGTTATTCAAGACAAAGAGGGTTCTAAAATACATGCTTCAATTAGACGTACTCTAATTTACAAATTTCAAAATGACATTTCTGAAGGCCATGTTTATGCCATACAAAACTTCAGTGTTGCTCCGAATTCTGGAATATACAGAACAACACACCACCCTTATAAGATAAATTTCCAGTTTGGTACAAAAGTTTCTTTGGTTAATGTTAATTTGGTTCCTAATATTAAACCACAATACACACCTTTGTCTTTATTGACAACCACTGCATTTGATACTGATTATTTGGTTGATATTTTGGGATTACTGGTCGGAGTGGGGACTGAAAGAGAATTGCAAGTTGATGGAAAGACAACAAAATTAAATGTCATAGCAATAGAAGCCGATGGGTTTCGAATAGAGTGTACTTTGTTTGGTATTTATGTGGATGAACTGAATGTATTTCTTTCGAGTGGAGAAGTACAAAATACTGCTGTAAGTATAGAATTTGCGAAAGTCAAAACTTTTCAAGATAAGGTTCAAGTTCAAAATTGTAAGTTCTGCACCCGTATTAAGTACAATGTTAACTTCAAGGAAGCATGTGAACTTAAATCAAGAATGTTTGAGAACAATGAATCTCCCTCTCAAGGATTAACGCAACTTTCTCAGACTTCAAAAAATACTGTCGAAGAGGACTTTTTAACACTTACACCTAGAACCAACATTCAAGGTCTAAAAGATTGTAAAGAGGTCACCACTTTCATATTGTTTGGAACAATTAAGCATATCTTGGTTGACGATGACTGGTGGTATACTACTTGTGTGTGCAACAAAGCTGTTTATCCAGATTCCAAGATGTTCTTTTGTGAGAAGTGTAACAAGCATGTTATAAAAGTCTTTCCAAGATATAGGATTAAGATCCGAGTTATGGACTCTTCCGATTCAACCACATTTGTCCTCTTTGATAGGGATGCAACTACCCTTTTCAAAAAAACTTGTGCTGATATGTTAGACGCTCATGATAAGATGAATTCTTCTGGAAATTTGCCTAAGCAGTTTGATGAGTTAGTTGATAGAAGTCTGCTTTTTAAAGTGGAAAGTAGGAACGATCAGAATTTCAAACTTGAACAGTCTTTCAGAGTGAAGAAAATATGTGTTGATGATGATATCATTGACAAATTCAATGATTCTTCGTTGAAATCTGTGGATGTTTATGCTAGAAATGGTGAGTTTAGCAGGGAAAAAATGCGTTTAGTGAATGAGTCCACCGTTAATATTTCAGAGGATTTATTAGTCCGATTTACCAAAGAAACAATTGAGTCTGGATCCCAATCACCTGAACTAATCCAAGATAATCCAACCAACGATGATGCTAGTAGTTCACATAAGAGAGAATCTGGAAAGAAGACTGTATCACTTGAATCCATCGAAGAAGATAATGTTCCATTGAAGCTTTTAAAAAGAAATATTAAGAAGGAAAAATCAGCGATTTGA 1614 0.3544 MSLCEVPNQSQSISEVSPQKENWNIIARVIRSWFVPDFTKQRCPFSMEFVIQDKEGSKIHASIRRTLIYKFQNDISEGHVYAIQNFSVAPNSGIYRTTHHPYKINFQFGTKVSLVNVNLVPNIKPQYTPLSLLTTTAFDTDYLVDILGLLVGVGTERELQVDGKTTKLNVIAIEADGFRIECTLFGIYVDELNVFLSSGEVQNTAVSIEFAKVKTFQDKVQVQNCKFCTRIKYNVNFKEACELKSRMFENNESPSQGLTQLSQTSKNTVEEDFLTLTPRTNIQGLKDCKEVTTFILFGTIKHILVDDDWWYTTCVCNKAVYPDSKMFFCEKCNKHVIKVFPRYRIKIRVMDSSDSTTFVLFDRDATTLFKKTCADMLDAHDKMNSSGNLPKQFDELVDRSLLFKVESRNDQNFKLEQSFRVKKICVDDDIIDKFNDSSLKSVDVYARNGEFSREKMRLVNESTVNISEDLLVRFTKETIESGSQSPELIQDNPTNDDASSSHKRESGKKTVSLESIEEDNVPLKLLKRNIKKEKSAI 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g02149 537 CDD RPA1_DBD_A_like 25 112 - -
Viun5g02149 537 SUPERFAMILY Nucleic acid-binding proteins 279 412 IPR012340 -
Viun5g02149 537 Gene3D - 120 256 IPR012340 -
Viun5g02149 537 Gene3D - 258 435 IPR012340 -
Viun5g02149 537 CDD RPA1_DBD_C 294 424 IPR047192 -
Viun5g02149 537 Pfam Domain of unknown function DUF223 49 129 IPR003871 -
Viun5g02149 537 MobiDBLite consensus disorder prediction 482 496 - -
Viun5g02149 537 SUPERFAMILY Nucleic acid-binding proteins 12 114 IPR012340 -
Viun5g02149 537 MobiDBLite consensus disorder prediction 482 513 - -
Viun5g02149 537 SUPERFAMILY Nucleic acid-binding proteins 129 247 IPR012340 -
Viun5g02149 537 Pfam Replication factor-A C terminal domain 296 421 IPR013955 -
Viun5g02149 537 Gene3D - 9 114 IPR012340 -
Viun5g02149 537 MobiDBLite consensus disorder prediction 497 513 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g02149 Viun-Chr5 27084179 27086856 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g02149 16 421 Core DNA Replication Machinery Family AT5G08020 23.095 3.78e-13 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g02149 - - vun:114165619 793.882