Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g02135 ATGTCACCCGTGCAGTTCGTTCCTTCCTCGTCTCATGCTCCTCGTTGGCTTCAAGTCCTCCTTACGGAGAAGTTCTACAACGCTTGCATAATTCACGAGGAGGCGAAGAAGAACGAGAAGAACGTCTATTGCTTGGATTGTTGCATCAGTCTCTGCCCTCACTGTTTGTCCCCTCACCGCTCTCATAGACTCTTGCAGATTAGAAGATATGTGTATCATGATGTTGTGAGGTTGGATGACGCTGCAAAATTAATTGACTGCACTTCGGTTCAATCCTACACAACCAACAGTGCAAAAGTGGTATTTTTAAACCAAAGGCCACAGACAAGGAACTTCAGAGGCTCCGGCAATTTCTGCAGCACCTGTGACAGAAGTCTGCAAGACCCATACCACTTCTGCTCCCTTTCTTGCAAGATCAATTATCTCGTCAGAACAACGGGTTCTCTCTCCGGTTACCTCTTCGAGTGCAACTACTTGCCGTTACCAGAATCTGGGCTCGACGATGGTCTGATGACCCCTGACTCGGTTCTGGAACCGGCCGGTTCGGCCCGAACCTCGTCAGGCTCCGGAGGGTATGGCGGGGTGGATTGCAGGACCACCCTGGCTTGCACTGCAACCACTGAGATTGTGAGGAAGAAGAGAACCGGCGGGTCTGGTTTCCGGCCACCGTGCCGACCGGCGTGTTCGCCTGTGTCGGAAATCTCGTCGGGTCTGATGAACCGGAGGAAAGGGAACCCCCAGAGGGCCCCGCTGTATTGA 759 0.527 MSPVQFVPSSSHAPRWLQVLLTEKFYNACIIHEEAKKNEKNVYCLDCCISLCPHCLSPHRSHRLLQIRRYVYHDVVRLDDAAKLIDCTSVQSYTTNSAKVVFLNQRPQTRNFRGSGNFCSTCDRSLQDPYHFCSLSCKINYLVRTTGSLSGYLFECNYLPLPESGLDDGLMTPDSVLEPAGSARTSSGSGGYGGVDCRTTLACTATTEIVRKKRTGGSGFRPPCRPACSPVSEISSGLMNRRKGNPQRAPLY 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g02135 252 Pfam PLATZ transcription factor 68 139 IPR006734 -
Viun5g02135 252 ProSiteProfiles Zinc finger B-box type profile. 24 67 IPR000315 GO:0008270
Viun5g02135 252 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 12 251 - -
Viun5g02135 252 CDD Bbox2 29 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g02135 Viun-Chr5 26756711 26758909 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Viun5g02135 PLATZ 2.1e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g02135 - - pvu:PHAVU_008G142900g 500.745