Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g02120 ATGGACAAGCACAAGTGCAAGCTTTGCTTCAGGAGCTTCTCCAATGGCAGAGCCTTGGGGGGTCACATGCGCTCTCACATGATGAACCTTCCTCTCTCGAAGCCCGAAGAAGCGTCACCGCGAACCATCCAACTCAGCTTCGAAGCCGAATCAGCTTCTTCTTCTTCATCTTCATCATCCGATGATGACGAAGACGGTGACAAGAGTCTCTGTTACGGCCTCAGAGAGAACCCCAAACGAAGCATTCGCCTCGTCGATCCCGAATTCTCGTTCGCAGCTGCAGATACTGGCTCCGCGATCGTCCATGACAGAGAGAGCGAGTCCGAGTCATCCAAGAGCAACCCAACTCGTAAAAGATCCAAAAGGCCATGGAATAACAATAATAATAATAATATTAATAGCAACAATTATTATTATTATAATGATCTTAATAATGATACTAACAATTATACCACCCCCAGCATCAAGAAGCAAGTTTTCGGAACCGAACATGAAGCCCTGATGAAGAAGAAGAGTAAGACAGATTCGTGGGTGGATCACGAACCTGCGAGCTCGGTCTCCGAAGCAACTACCGAGGAAGACGTGGCGTTTTGTCTGATGCTGCTTTCCAGGGACAAATGGAAGCGACATAAGGACCAACCGCAATTCATGGAGGTGGAAGATCAATACGAGGAGGAGGAAGAGGAGGAGGAGGAAGAAGAGGAGGAAGACGAAGCGTTCGAGGAGAGCGAGGAATCCCAAGAGACGATGAAACTGTGCAAGAACCGAGTACGAGGAAGGTACAAATGCGACACGTGCAACAAGGTGTTTCGATCGTACCAAGCTTTGGGGGGACACCGAGCGAGTCACAAGAAGATCAAAGTGAACGTGAAAGTGGACGGTGAAGAAGCGGAAGTTGAGCACAGGAAGAAAGGTGGGACGTGTGGCGTGGAGAAGAAAATCCACGAGTGCCCCGTTTGTTTCAGAGTCTTCGCTTCGGGTCAAGCACTTGGTGGACACAAGAGAACCCATGTTACTGGGTCAGCACCCGCAACAGTTCCATCAACTTCAGCAAAGTTTGGAAACAGCTTCATAGATCTCAACCTGCCTGCTCCGATTGACGAAGACGAGGCTAGCCAAATCGAGAACTCTGCTGTTTCCGATGCAGAATTCGTCAAAACCCGATAG 1167 0.491 MDKHKCKLCFRSFSNGRALGGHMRSHMMNLPLSKPEEASPRTIQLSFEAESASSSSSSSSDDDEDGDKSLCYGLRENPKRSIRLVDPEFSFAAADTGSAIVHDRESESESSKSNPTRKRSKRPWNNNNNNNINSNNYYYYNDLNNDTNNYTTPSIKKQVFGTEHEALMKKKSKTDSWVDHEPASSVSEATTEEDVAFCLMLLSRDKWKRHKDQPQFMEVEDQYEEEEEEEEEEEEEDEAFEESEESQETMKLCKNRVRGRYKCDTCNKVFRSYQALGGHRASHKKIKVNVKVDGEEAEVEHRKKGGTCGVEKKIHECPVCFRVFASGQALGGHKRTHVTGSAPATVPSTSAKFGNSFIDLNLPAPIDEDEASQIENSAVSDAEFVKTR 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g02120 388 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Viun5g02120 388 SUPERFAMILY beta-beta-alpha zinc fingers 260 337 IPR036236 -
Viun5g02120 388 ProSiteProfiles Zinc finger C2H2 type domain profile. 315 342 IPR013087 -
Viun5g02120 388 SMART c2h2final6 315 337 IPR013087 -
Viun5g02120 388 SMART c2h2final6 4 26 IPR013087 -
Viun5g02120 388 SMART c2h2final6 261 283 IPR013087 -
Viun5g02120 388 MobiDBLite consensus disorder prediction 373 388 - -
Viun5g02120 388 Coils Coil 216 249 - -
Viun5g02120 388 MobiDBLite consensus disorder prediction 44 59 - -
Viun5g02120 388 MobiDBLite consensus disorder prediction 100 137 - -
Viun5g02120 388 ProSitePatterns Zinc finger C2H2 type domain signature. 317 337 IPR013087 -
Viun5g02120 388 MobiDBLite consensus disorder prediction 219 244 - -
Viun5g02120 388 MobiDBLite consensus disorder prediction 213 249 - -
Viun5g02120 388 ProSitePatterns Zinc finger C2H2 type domain signature. 263 283 IPR013087 -
Viun5g02120 388 MobiDBLite consensus disorder prediction 369 388 - -
Viun5g02120 388 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
Viun5g02120 388 MobiDBLite consensus disorder prediction 100 116 - -
Viun5g02120 388 Gene3D Classic Zinc Finger 258 337 - -
Viun5g02120 388 MobiDBLite consensus disorder prediction 120 137 - -
Viun5g02120 388 SUPERFAMILY beta-beta-alpha zinc fingers 3 31 IPR036236 -
Viun5g02120 388 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 387 IPR044303 GO:0006355
Viun5g02120 388 ProSiteProfiles Zinc finger C2H2 type domain profile. 261 288 IPR013087 -
Viun5g02120 388 MobiDBLite consensus disorder prediction 32 73 - -
Viun5g02120 388 Pfam C2H2-type zinc finger 260 285 - -
Viun5g02120 388 Pfam C2H2-type zinc finger 4 27 - -
Viun5g02120 388 Pfam C2H2-type zinc finger 315 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g02120 Viun-Chr5 26215930 26217480 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g02120 1 374 C2H2 Transcription Factor Family AT3G60580 40.263 7.98e-65 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Viun5g02120 zf-C2H2_6 3.1e-13 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g02120 - - vra:106780254 640.188