Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g02093 ATGTACATGATCCTTCTGAAACTGCTACTCTTCCTCCTCGCATGGCCTTCTTCTCCATCTCATTCCACCTCCATGACCCAGCTTGACACTCTCTTGGCCATCAGAGACTCTCTAGACCCAGAGAACCGTGTGTTGCTCTCTTGGACCCCCCATTCGGACCCCTGCAGTAGTGCCTCTTTTGAGGGTGTGGCTTGCAATGAGCAAGGCCTCGTTACCAATATTTCACTGCAAGGAAAGGGTCTCAATGGAAGACTACCCGAAGCTTTGGCTGCTCTCAAGTCCTTGACGGGCCTCTTCCTTCACTTCAATGCCCTCAATGGGATATTTCCAAAGGAAATTGCCACTTTGACTGAGCTAAGTGATTTGTATCTCAATGTCAATAACCTCTCTGGTGATATCCCTCGCGAGATTGGCAATATGTCAAATCTTCAAGTTTTGCAGCTTTGCTATAACAAGTTTAGTGGGAGTATACCCACTGAACTGGGAAGATTGAGAAAGCTCAGTGTTGTTGCACTACAATATAATCAATTGAATAGCGCTATTCCTGCGAGTTTGGGTGAAGTGGGGACATTGGCGCGATTGGATCTGAGCTTTAATAATTTTTTCGGTCCTATTCCGGTGACATTGGCTAATGCGCCTAAACTCCACACTCTGAATATTCGTAACAATTCTCTCTCTGGCCGTGTACCTACAGCTCTGAGAAGACTTAAAGGTGGGTTTCAATACATGAACAATCCGGGTTTATGTGGGACTGGATTTGCTGATTTACATTCCTGCAAAGAAGTAAGCACTTCAGAACCGGTTAGACCGGAACCATATCAACCTGGTGATATTTCTAGCAAAGATCTTCCTGCATCAATGGAACCACATCGTGAAAGCTGTCGCGGTGATCATTGTAAAAGGACATCGAAATCTTCAAAAATTGGTCTGGTTTTTACCGTCATTAGTCTCGTTTTCGCTTCAACTGTTGCTGGACTGCTTCTGCTGTTCTGGCGACGTAGTCAGATTCAGAAAATTGGAACTTCTGATACCCGGCTTAAGCAAGTGTGTAAGAAAAGTGCGTTTCCTCTTATCAGTTTGGAGTATTCTGATAGTTGGGACCCATTAGACAAAGGTGTTAGTGGGTATTCCCAGGAATTTCTCGAAAGCTTTATGTTTAATCTTGAAGAAGTAGAACGCGCAACTCAAATCTTCTCAGAGGTAAATTTATTGGGGAAGAGTGATTCTTCAGCTGTGTACCGGGGCTTTTTGAGAGATGGTTCTGCTGTGACTGTAAAGTGCATTGCCAAAACAAGTTGCAAATCTGACGAAGGTGAGTTCTTGAAAGGTTTGAAGATATTGACCTCGTTAAGGCATGGAAATCTAGTTCGATTGAGAGGGTTTTGCTGTTCAAAAGGACGCGGGGAATGTTTTCTTATCTATGACTCTATCTCTAACGGGAGTTTGTTGAAGTATCTTGATGTTAAGAGAAACAGTGATAAGGTACTTGATTGGTCGACCAGAGTGTTCATCATTCGTGGTATTGCTAAAGGTATCGATTATCTGCATAGGAAGAAAGGAAGCAAACATGGTATCGTTCACCAAAATATATCAGCTGAAAATGTACTTCTGGATGCTGGGTATAAGGCTTTAATTGCAGATTCGGGAATGCACAAGCTCCTTGAAGATGATGTTGTTTTCTCCGCCCTGAAAGCTAGCGCTGCCATGGGATATCTGCCTCCAGAGTACACAAAAACTGGTCGTTTGACAGAAAAGAGTGATGTGTATGCCTTTGGAGTGATTGTTTTCCAGCTTCTCACTGGAAAACGTGATATCACCCAGTTCAATTGCCAAAGTGGCAGTTTGAAAGATATAGTTGATGAGAATCTTGAAGGAATGTTCTCAGAATCAGAGGCCACCAAGCTGAGAAGAGTCGCTGTGCTTTGCACTCACGAGTCCCCACATCTTCGACCATATATGGATACCCTAATGCCAGAACTGGATGATAATGAGTAG 1995 0.4361 MYMILLKLLLFLLAWPSSPSHSTSMTQLDTLLAIRDSLDPENRVLLSWTPHSDPCSSASFEGVACNEQGLVTNISLQGKGLNGRLPEALAALKSLTGLFLHFNALNGIFPKEIATLTELSDLYLNVNNLSGDIPREIGNMSNLQVLQLCYNKFSGSIPTELGRLRKLSVVALQYNQLNSAIPASLGEVGTLARLDLSFNNFFGPIPVTLANAPKLHTLNIRNNSLSGRVPTALRRLKGGFQYMNNPGLCGTGFADLHSCKEVSTSEPVRPEPYQPGDISSKDLPASMEPHRESCRGDHCKRTSKSSKIGLVFTVISLVFASTVAGLLLLFWRRSQIQKIGTSDTRLKQVCKKSAFPLISLEYSDSWDPLDKGVSGYSQEFLESFMFNLEEVERATQIFSEVNLLGKSDSSAVYRGFLRDGSAVTVKCIAKTSCKSDEGEFLKGLKILTSLRHGNLVRLRGFCCSKGRGECFLIYDSISNGSLLKYLDVKRNSDKVLDWSTRVFIIRGIAKGIDYLHRKKGSKHGIVHQNISAENVLLDAGYKALIADSGMHKLLEDDVVFSALKASAAMGYLPPEYTKTGRLTEKSDVYAFGVIVFQLLTGKRDITQFNCQSGSLKDIVDENLEGMFSESEATKLRRVAVLCTHESPHLRPYMDTLMPELDDNE 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g02093 664 Pfam Leucine rich repeat N-terminal domain 26 66 IPR013210 -
Viun5g02093 664 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 141 662 IPR046959 -
Viun5g02093 664 MobiDBLite consensus disorder prediction 264 298 - -
Viun5g02093 664 Pfam Protein tyrosine and serine/threonine kinase 402 660 IPR001245 GO:0004672|GO:0006468
Viun5g02093 664 Gene3D Phosphorylase Kinase; domain 1 372 475 - -
Viun5g02093 664 ProSiteProfiles Protein kinase domain profile. 398 664 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g02093 664 SUPERFAMILY Protein kinase-like (PK-like) 374 658 IPR011009 -
Viun5g02093 664 FunFam Leucine-rich repeat receptor-like kinase 26 137 - -
Viun5g02093 664 FunFam Protein NSP-INTERACTING KINASE 2 138 260 - -
Viun5g02093 664 Gene3D Ribonuclease Inhibitor 24 260 IPR032675 -
Viun5g02093 664 SUPERFAMILY L domain-like 23 237 - -
Viun5g02093 664 MobiDBLite consensus disorder prediction 284 298 - -
Viun5g02093 664 Gene3D Transferase(Phosphotransferase) domain 1 477 664 - -
Viun5g02093 664 FunFam Protein NSP-INTERACTING KINASE 2 370 476 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g02093 Viun-Chr5 25169960 25172975 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g02093 1 511 Miscellaneous Gene Families AT4G22730 47.834 8.49e-163 476
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IV Viun5g02093 PK_Tyr_Ser-Thr 1.9e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g02093 - - var:108327466 1204.12