LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun5g02087	ATGCATTTTTGCAATAAAAAACAAAGGGGTTGTTGGTTTTGCGATGTTATGGTTCTGGTTTGTGTGGTGTTGATCAAGGAGGAACTCGATTTCTTGCTCATCAAGGATTTCTTAATGGGTTCGCCTGTTAATGGATTGGATTCTTTAGCAGAAGTTGAGAATTCAGTTTCTGTGGTAGATCATGATCCTCCTTCAACATCAGGGATTCCCCGGCCATCTCGGCCACCGTTAAGCACATCAAGAAATCATGGGGCATCATCCAGTCAGCATAACTATGGAATGCAGAATATGGAGAAGCAGCAATATAACACAAATGGAAAATCTGAGTATGTGAGCCTGAATAAAGCTGTTGAAAGTTGTTTAGGAAAGAATATCTCCAAAATGGAAACTAAGTTAAGTATCAAGCAACCGTTAAATGCTTCCAAGAATTGTGATTCGTCTAAAGGCAACTCTGAATCAGAGATTACCTTTTGTCCAAGTCCTCAGAATAGTTTCTATTCAGAAGCCAAGGAAAGCTTTGGCAACACTGGAGCCAGTGAATGTGTTAGTGTTGATAAGTCAGTTGAAAGTGGAGAAGTTACCAATTCCTGTGAATTTAACGAGAGCAGGAAAACCAGCATCTGTAGAGGCAGCACTGGAAGTGACGTTAGTGATGAGAGCAGCACTAGTAGTCTGAGCAGTGCTTTGTATAAGCCTCACAAGGCAAATGATATAAGATGGGAAGCAATTCAAGCCATTCGAGCCCGTGATGGGTTGTTGGAAATGAGACATTTCAGGTTGTTGAAGAAATTGGGATGTGGAGACATAGGAAGTGTATATCTAGCTGAACTAAGTGGCACTAGGACTTGTTTTGCAATGAAAGTAATGAACAAAACTGAATTGGCAAGTCGCAAGAAGCTTGTTAGGTCTCAGACAGAGAGAGAGATACTGCAGTCTCTAGATCATCCATTTCTACCCACATTGTACACACACTTTGAGACAGAGACGTTTTCCTGCTTGGTAATGGAGTTTTGCCCTGGTGGGGACTTGCATGCACTCAGGCAAAGACAACCTGGGAAGTATTTTTCTGAGATTGCTGCCAGGTTTTATGTGGCAGAAGTTCTCCTTGCCTTGGAGTACTTGCACATGCTTGGAGTCATCTACAGAGATCTGAAGCCTGAGAATGTGTTGGTGAGAGAAGATGGACATATAATGCTTTCAGATTTTGATCTGTCTCTAAGGTGTGCCGTAAGTCCAACTCTGGTGAAGTCATCAAACTCTACATTGGAAACAAAAAGCTCAGGATACTGCATTCAGCCTGCGTGCATTGAGCCAAGTTGTGTAATTCAGCCAGACTGCATTCAACCATCATGTTTCACACCACGATTTCTCTCAGGCAAATCCAAGAAAGAAAAAAAGTTGAAGCCAAAGAATGATGTGCAGAATCAGGTGACCCCTCTTCCGGAGCTCATTGCCGAACCCACCAATGCTAGATCAATGTCCTTTGTGGGAACACACGAGTACCTGGCACCTGAAATCATCAAAGGTGAAGGACATGGCAGTGCTGTGGACTGGTGGACATTTGGGATATTCTTGTACGAGCTGTTGTTCGGAAGAACGCCGTTCAAAGGGTCTGCGAACCGTGCAACGCTGTTCAATGTTGTTGGCCAGCCCTTGAAATTTCCAGATTCTCCCTCTGTGAGCTTTGCTGCCAGGGACTTGATCAGAGGTTTACTTGTGAAAGAACCTCAGAATCGGCTTGCTTACAGACGTGGAGCCACAGAGATAAAACAACATCCATTTTTTCATAATGTTAACTGGGCACTGATCCGATGTGCAAATCCCCCAGAGGTTCCCAGACAGGCCATGAAAGCACTTGCAGCAGCTGAAAAGGTTCCTGGAGTGAAGCCTTCTGGTAACTATTTAGATATTGATTTCTTTTGA	1923	0.4353	MHFCNKKQRGCWFCDVMVLVCVVLIKEELDFLLIKDFLMGSPVNGLDSLAEVENSVSVVDHDPPSTSGIPRPSRPPLSTSRNHGASSSQHNYGMQNMEKQQYNTNGKSEYVSLNKAVESCLGKNISKMETKLSIKQPLNASKNCDSSKGNSESEITFCPSPQNSFYSEAKESFGNTGASECVSVDKSVESGEVTNSCEFNESRKTSICRGSTGSDVSDESSTSSLSSALYKPHKANDIRWEAIQAIRARDGLLEMRHFRLLKKLGCGDIGSVYLAELSGTRTCFAMKVMNKTELASRKKLVRSQTEREILQSLDHPFLPTLYTHFETETFSCLVMEFCPGGDLHALRQRQPGKYFSEIAARFYVAEVLLALEYLHMLGVIYRDLKPENVLVREDGHIMLSDFDLSLRCAVSPTLVKSSNSTLETKSSGYCIQPACIEPSCVIQPDCIQPSCFTPRFLSGKSKKEKKLKPKNDVQNQVTPLPELIAEPTNARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGRTPFKGSANRATLFNVVGQPLKFPDSPSVSFAARDLIRGLLVKEPQNRLAYRRGATEIKQHPFFHNVNWALIRCANPPEVPRQAMKALAAAEKVPGVKPSGNYLDIDFF	640

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun5g02087	640	PANTHER	FLIPPASE KINASE 1-RELATED	109	617	-	-
	Viun5g02087	640	SUPERFAMILY	Protein kinase-like (PK-like)	236	615	IPR011009	-
	Viun5g02087	640	Pfam	Protein kinase domain	492	595	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun5g02087	640	Pfam	Protein kinase domain	259	412	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun5g02087	640	Gene3D	Transferase(Phosphotransferase) domain 1	489	613	-	-
	Viun5g02087	640	SMART	serkin_6	258	595	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun5g02087	640	MobiDBLite	consensus disorder prediction	72	92	-	-
	Viun5g02087	640	Gene3D	Phosphorylase Kinase; domain 1	256	341	-	-
	Viun5g02087	640	FunFam	serine/threonine-protein kinase D6PK-like	342	409	-	-
	Viun5g02087	640	MobiDBLite	consensus disorder prediction	58	92	-	-
	Viun5g02087	640	ProSiteProfiles	Protein kinase domain profile.	258	595	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun5g02087	640	FunFam	serine/threonine-protein kinase D6PK-like	490	613	-	-
	Viun5g02087	640	Gene3D	Transferase(Phosphotransferase) domain 1	342	410	-	-
	Viun5g02087	640	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	379	391	IPR008271	GO:0004672\|GO:0006468
	Viun5g02087	640	FunFam	Serine/threonine-protein kinase D6PK-like	256	341	-	-
	Viun5g02087	640	CDD	STKc_phototropin_like	256	615	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun5g02087	Viun-Chr5	24982011	24985194	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun5g02087	183	640	AGC Kinase Gene Family	AT5G47750	72.899	0.0	701

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	AGC_RSK-2	Viun5g02087		Pkinase	6.1e-37	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun5g02087	K08286		-	gmx:100802402	1065.83