LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun5g02086	ATGGGTTCGCCTGTTAATGGATTGGATTCTTTAGCAGAAGTTGAGAATTCAGTTTCTGTGGTAGATCATGATCCTCCTTCAACATCAGGGATTCCCCGGCCATCTCGGCCACCGTTAAGCACATCAAGAAATCATGGGGCATCATCCAGTCAGCATAACTATGGAATGCAGAATATGGAGAAGCAGCAATATAACACAAATGGAAAATCTGAGTATGTGAGCCTGAATAAAGCTGTTGAAAGTTGTTTAGGAAAGAATATCTCCAAAATGGAAACTAAGTTAAGTATCAAGCAACCGTTAAATGCTTCCAAGAATTGTGATTCGTCTAAAGGCAACTCTGAATCAGAGATTACCTTTTGTCCAAGTCCTCAGAATAGTTTCTATTCAGAAGCCAAGGAAAGCTTTGGCAACACTGGAGCCAGTGAATGTGTTAGTGTTGATAAGTCAGTTGAAAGTGGAGAAGTTACCAATTCCTGTGAATTTAACGAGAGCAGGAAAACCAGCATCTGTAGAGGCAGCACTGGAAGTGACGTTAGTGATGAGAGCAGCACTAGTAGTCTGAGCAGTGCTTTGTATAAGCCTCACAAGGCAAATGATATAAGATGGGAAGCAATTCAAGCCATTCGAGCCCGTGATGGGTTGTTGGAAATGAGACATTTCAGGTTGTTGAAGAAATTGGGATGTGGAGACATAGGAAGTGTATATCTAGCTGAACTAAGTGGCACTAGGACTTGTTTTGCAATGAAAGTAATGAACAAAACTGAATTGGCAAGTCGCAAGAAGCTTGTTAGGTCTCAGACAGAGAGAGAGATACTGCAGTCTCTAGATCATCCATTTCTACCCACATTGTACACACACTTTGAGACAGAGACGTTTTCCTGCTTGGTAATGGAGTTTTGCCCTGGTGGGGACTTGCATGCACTCAGGCAAAGACAACCTGGGAAGTATTTTTCTGAGATTGCTGCCAGGTTTTATGTGGCAGAAGTTCTCCTTGCCTTGGAGTACTTGCACATGCTTGGAGTCATCTACAGAGATCTGAAGCCTGAGAATGTGTTGGTGAGAGAAGATGGACATATAATGCTTTCAGATTTTGATCTGTCTCTAAGGTGTGCCGTAAGTCCAACTCTGGTGAAGTCATCAAACTCTACATTGGAAACAAAAAGCTCAGGATACTGCATTCAGCCTGCGTGCATTGAGCCAAGTTGTGTAATTCAGCCAGACTGCATTCAACCATCATGTTTCACACCACGATTTCTCTCAGGCAAATCCAAGAAAGAAAAAAAGTTGAAGCCAAAGAATGATGTGCAGAATCAGGTGACCCCTCTTCCGGAGCTCATTGCCGAACCCACCAATGCTAGATCAATGTCCTTTGTGGGAACACACGAGTACCTGGCACCTGAAATCATCAAAGGTGAAGGACATGGCAGTGCTGTGGACTGGTGGACATTTGGGATATTCTTGTACGAGCTGTTGTTCGGAAGAACGCCGTTCAAAGGGTCTGCGAACCGTGCAACGCTGTTCAATGTTGTTGGCCAGCCCTTGAAATTTCCAGATTCTCCCTCTGTGAGCTTTGCTGCCAGGGACTTGATCAGAGGTTTACTTGTGAAAGAACCTCAGAATCGGCTTGCTTACAGACGTGGAGCCACAGAGATAAAACAACATCCATTTTTTCATAATGTTAACTGGGCACTGATCCGATGTGCAAATCCCCCAGAGGTTCCCAGACAGGCCATGAAAGCACTTGCAGCAGCTGAAAAGGTTCCTGGAGTGAAGCCTTCTGGTAACTATTTAGATATTGATTTCTTTTGA	1809	0.4389	MGSPVNGLDSLAEVENSVSVVDHDPPSTSGIPRPSRPPLSTSRNHGASSSQHNYGMQNMEKQQYNTNGKSEYVSLNKAVESCLGKNISKMETKLSIKQPLNASKNCDSSKGNSESEITFCPSPQNSFYSEAKESFGNTGASECVSVDKSVESGEVTNSCEFNESRKTSICRGSTGSDVSDESSTSSLSSALYKPHKANDIRWEAIQAIRARDGLLEMRHFRLLKKLGCGDIGSVYLAELSGTRTCFAMKVMNKTELASRKKLVRSQTEREILQSLDHPFLPTLYTHFETETFSCLVMEFCPGGDLHALRQRQPGKYFSEIAARFYVAEVLLALEYLHMLGVIYRDLKPENVLVREDGHIMLSDFDLSLRCAVSPTLVKSSNSTLETKSSGYCIQPACIEPSCVIQPDCIQPSCFTPRFLSGKSKKEKKLKPKNDVQNQVTPLPELIAEPTNARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGRTPFKGSANRATLFNVVGQPLKFPDSPSVSFAARDLIRGLLVKEPQNRLAYRRGATEIKQHPFFHNVNWALIRCANPPEVPRQAMKALAAAEKVPGVKPSGNYLDIDFF	602

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun5g02086	602	CDD	STKc_phototropin_like	218	577	-	-
	Viun5g02086	602	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	341	353	IPR008271	GO:0004672\|GO:0006468
	Viun5g02086	602	Gene3D	Transferase(Phosphotransferase) domain 1	451	575	-	-
	Viun5g02086	602	Pfam	Protein kinase domain	221	374	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun5g02086	602	Pfam	Protein kinase domain	454	557	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun5g02086	602	Gene3D	Transferase(Phosphotransferase) domain 1	304	372	-	-
	Viun5g02086	602	FunFam	serine/threonine-protein kinase D6PK-like	304	371	-	-
	Viun5g02086	602	MobiDBLite	consensus disorder prediction	1	59	-	-
	Viun5g02086	602	Gene3D	Phosphorylase Kinase; domain 1	218	303	-	-
	Viun5g02086	602	SUPERFAMILY	Protein kinase-like (PK-like)	198	577	IPR011009	-
	Viun5g02086	602	FunFam	serine/threonine-protein kinase D6PK-like	452	575	-	-
	Viun5g02086	602	MobiDBLite	consensus disorder prediction	34	59	-	-
	Viun5g02086	602	ProSiteProfiles	Protein kinase domain profile.	220	557	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun5g02086	602	FunFam	Serine/threonine-protein kinase D6PK-like	218	303	-	-
	Viun5g02086	602	SMART	serkin_6	220	557	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun5g02086	602	PANTHER	FLIPPASE KINASE 1-RELATED	71	579	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun5g02086	Viun-Chr5	24981421	24984996	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun5g02086	145	602	AGC Kinase Gene Family	AT5G47750	72.996	0.0	703

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	AGC_RSK-2	Viun5g02086		Pkinase	5.5e-37	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun5g02086	K08286		-	gmx:100802402	1065.83