Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g02082 ATGGAGTCACCGCCCAGTAATCACCACTCCGTCGACGGCGATGCCAACGACGTTAGAGCTTTCTCCCACCACGACGACGAAGACGACAAGCCCCAGCCTCTCACCGGTGACGGTGCCAGTCCCGGAAAGATTTTTATTGGCGGTTTAGCGAGAGAAACCACTATTGCACAATTCATCAAGCACTTTGGTAAATATGGTGAGATTACGGATTCCGTTATCATGAAGGACAGAAAGACCGGCCAGCCTCGGGGCTTCGGCTTCATAACTTACGCTGATCCCTCTGTGGTAGATACAGTTATTGAGGACACTCACATTATCAACGGCAAGCAGGTGGAGATAAAGCGGACGATTCCGAGGGGTGCCGTTGGCTCGAACTCTAAGGACTTCCGAACCAAGAAGATTTTTGTTGGTGGAATTCCTTCTACTGTGAGTGAAGATGAATTTAGGGACTTTTTTACACGCTATGGAGAAGTCAAAGATCACCAGATAATGCGGGATCACTCTACTAATCGATCACGCGGCTTTGGGTTTATTACCTACGACTCTGAAGAAGCTGTTGATGATCTCTTAGCTGTGGGCAACAAAATTGAGTTTGCTGGAGCTCAGGTGGAAATCAAGAAGGCGGAACCGAAAAAGCCCAATCCACCAGCCCCTTCATCCAAGCGTTATAATGATGCCCGGTCTTCATATGGTGGTGGATATGGAGATGCTTATGATGGATTTAGTGGTAATTTTGGTATGGGTGGCTATAGGTCAGGTGGTGGTGGTGCCTATGGTGGTAGGGGAAGTGCTTATGGTGGATTTGGAAGTGAATTTGGTGGGTATGGAAGATATGCTGGTGCCATGGGGCCTTATAGAGGTGATCCTTCTCTTGGGTATGCTGGTAGATATGGTGGAGGCTTTGGCAGAGGCTATGATCTTGGTGGGTATGGTGGAGCTAGTGAGGGTTATGGAGCATATGGTGGTAGTGGTGGTGGTGGTTCCTCTGGTAATGCTTATGGAAGCAGCTATGATGCCAGCCTAGGGGGTGGATATGGAGGAGCTGGTGGAGGCTCCTTTTATGGGACTAGAGGGGGATATGGTGGTGCAGGAACTGCTCGATATCATCCTTATGGAAGATAG 1122 0.4911 MESPPSNHHSVDGDANDVRAFSHHDDEDDKPQPLTGDGASPGKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFITYADPSVVDTVIEDTHIINGKQVEIKRTIPRGAVGSNSKDFRTKKIFVGGIPSTVSEDEFRDFFTRYGEVKDHQIMRDHSTNRSRGFGFITYDSEEAVDDLLAVGNKIEFAGAQVEIKKAEPKKPNPPAPSSKRYNDARSSYGGGYGDAYDGFSGNFGMGGYRSGGGGAYGGRGSAYGGFGSEFGGYGRYAGAMGPYRGDPSLGYAGRYGGGFGRGYDLGGYGGASEGYGAYGGSGGGGSSGNAYGSSYDASLGGGYGGAGGGSFYGTRGGYGGAGTARYHPYGR 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g02082 373 FunFam Heterogeneous nuclear ribonucleoprotein 1 41 123 - -
Viun5g02082 373 SUPERFAMILY RNA-binding domain, RBD 38 121 IPR035979 GO:0003676
Viun5g02082 373 SUPERFAMILY RNA-binding domain, RBD 127 239 IPR035979 GO:0003676
Viun5g02082 373 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 132 210 IPR000504 GO:0003723
Viun5g02082 373 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 134 202 IPR000504 GO:0003723
Viun5g02082 373 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 44 111 IPR000504 GO:0003723
Viun5g02082 373 MobiDBLite consensus disorder prediction 1 41 - -
Viun5g02082 373 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 26 373 - -
Viun5g02082 373 Gene3D - 42 121 IPR012677 -
Viun5g02082 373 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 42 118 IPR000504 GO:0003723
Viun5g02082 373 MobiDBLite consensus disorder prediction 206 226 - -
Viun5g02082 373 FunFam Heterogeneous nuclear ribonucleoprotein 1 124 245 - -
Viun5g02082 373 MobiDBLite consensus disorder prediction 12 33 - -
Viun5g02082 373 Gene3D - 124 240 IPR012677 -
Viun5g02082 373 SMART rrm1_1 133 206 IPR000504 GO:0003723
Viun5g02082 373 SMART rrm1_1 43 114 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g02082 Viun-Chr5 24849433 24853356 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g02082 16 192 Eukaryotic Initiation Factors Gene Family AT1G71770 25.907 4.17e-15 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g02082 K12741 - gmx:100813165 493.426