Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g02075 ATGCAGAACAAAAGAATGGCCGTTAACGAAGAACAGAAACGGAGCCCCATAAGCCAAAAGATCCCATTAGCAGATTCCAATGTCCAAAACATGGTCACCCTTTTATCCCCAAGGTTCAAATCTGCAGCTGCTATGGCTGGATGGGATGAAGAGGCATTGTTATTGGCCAGCCTCATCGTTGAAGATACGCCAGTTAGAAATTCCAAGCACAAGAAACGCCCTCCTCTGAATTCCAGTTCTCCATCCACCAACTCATCAAGGATACGTAGAGCTCGGAGGACTTCACAACAACCAATCCCTGTAATTCTTGATCTTGATGCAGAAGAAACTCCCAAAAAGGAAAGTGGGAGAAAGAAGGAAGAAAGGGCTTGTGTAAATAACGAGGGAAGCAAAGGAGCAGGAGATGGGAATGAATCGAAAAAGAAGAACCCGGGTGGCCCTTCTTCTAGTTCTGCTTTACCCTGCATTGATAAACTTAGGGACGAGCTTTCATGTGCTATTTGTTTGGAAATATGCTTTGAGCCAAGTACCACTCCTTGTGGTCACAGCTTCTGTAGAAAATGTCTACGATCTGCCGCAGACAAGTGTGGCAAAAAGTGCCCCAAATGCAGGCAATTAATAAGCAATGGACGATCATGCACTGTAAACACAGTCCTCTGGAACACAATCCAGCTCCTGTTTCCCCAAGAAATTGAGGCAAGAAAAGCAGTGGGGTCCTTGAATAGTCGCGAACAAGGTAAAAATCTGAGTCCTGAAACAGCATTTTATGCTAACCTAAGGAATAGAAGCATACAACGTTCTGGTGGGGCTTCAAGCAGAAACAATTCAAGGAGGGGTGTGGCAGTGACATCAACAACACAGGAGGATGAGGATGCTGCATTGGCTAGAAGGTTACATAGAGAAATTAATGAAGAAAGCCCAGGAACAACTCGAATGAGGACAAGACGAGGGGTTCCTACTAGCCAACATCAGGATGCAGCTTTGGCTCTAAGGTTGCAGAGAGAAGAGTTCATCCAAACTTTTAGGGAGAGTAGCCAGGAACAGACTATTAGGCTACCTTCATCGTCTTTTGCAAGAGAAAATTTGAGGGCTATGGCCTCTAGAGCCATGAATCCGAGGACTCGTGACAGAAGATGA 1137 0.4538 MQNKRMAVNEEQKRSPISQKIPLADSNVQNMVTLLSPRFKSAAAMAGWDEEALLLASLIVEDTPVRNSKHKKRPPLNSSSPSTNSSRIRRARRTSQQPIPVILDLDAEETPKKESGRKKEERACVNNEGSKGAGDGNESKKKNPGGPSSSSALPCIDKLRDELSCAICLEICFEPSTTPCGHSFCRKCLRSAADKCGKKCPKCRQLISNGRSCTVNTVLWNTIQLLFPQEIEARKAVGSLNSREQGKNLSPETAFYANLRNRSIQRSGGASSRNNSRRGVAVTSTTQEDEDAALARRLHREINEESPGTTRMRTRRGVPTSQHQDAALALRLQREEFIQTFRESSQEQTIRLPSSSFARENLRAMASRAMNPRTRDRR 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g02075 378 MobiDBLite consensus disorder prediction 290 311 - -
Viun5g02075 378 SUPERFAMILY RING/U-box 157 228 - -
Viun5g02075 378 MobiDBLite consensus disorder prediction 1 22 - -
Viun5g02075 378 SMART ring_2 165 203 IPR001841 -
Viun5g02075 378 MobiDBLite consensus disorder prediction 66 151 - -
Viun5g02075 378 PANTHER UNCHARACTERIZED 322 371 - -
Viun5g02075 378 ProSitePatterns Zinc finger RING-type signature. 180 189 IPR017907 -
Viun5g02075 378 MobiDBLite consensus disorder prediction 74 93 - -
Viun5g02075 378 Pfam Zinc finger, C3HC4 type (RING finger) 165 203 IPR018957 GO:0046872
Viun5g02075 378 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 109 234 IPR013083 -
Viun5g02075 378 MobiDBLite consensus disorder prediction 265 289 - -
Viun5g02075 378 MobiDBLite consensus disorder prediction 265 324 - -
Viun5g02075 378 MobiDBLite consensus disorder prediction 106 126 - -
Viun5g02075 378 ProSiteProfiles Zinc finger RING-type profile. 165 204 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g02075 Viun-Chr5 24796363 24798736 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g02075 146 219 RAD5 or RAD16-like Gene Family AT5G43530 36.250 2.00e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g02075 - - gmx:102666585 526.168