Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g02074 ATGCAGAACAAAAGAATGGCCGTTAACGAAGAACAGAAACGGAGCCCCATAAGCCAAAAGATCCCATTAGCAGATTCCAATGTCCAAAACATGGTCACCCTTTTATCCCCAAGGTTCAAATCTGCAGCTGCTATGGCTGGATGGGATGAAGAGGCATTGTTATTGGCCAGCCTCATCGTTGAAGATACGCCAGTTAGAAATTCCAAGCACAAGAAACGCCCTCCTCTGAATTCCAGTTCTCCATCCACCAACTCATCAAGAGCTCGGAGGACTTCACAACAACCAATCCCTGTAATTCTTGATCTTGATGCAGAAGAAACTCCCAAAAAGGAAAGTGGGAGAAAGAAGGAAGAAAGGGCTTGTGTAAATAACGAGGGAAGCAAAGGAGCAGGAGATGGGAATGAATCGAAAAAGAAGAACCCGGGTGGCCCTTCTTCTAGTTCTGCTTTACCCTGCATTGATAAACTTAGGGACGAGCTTTCATGTGCTATTTGTTTGGAAATATGCTTTGAGCCAAGTACCACTCCTTGTGGTCACAGCTTCTGTAGAAAATGTCTACGATCTGCCGCAGACAAGTGTGGCAAAAAGTGCCCCAAATGCAGGCAATTAATAAGCAATGGACGATCATGCACTGTAAACACAGTCCTCTGGAACACAATCCAGCTCCTGTTTCCCCAAGAAATTGAGGCAAGAAAAGCAGTGGGGTCCTTGAATAGTCGCGAACAAGGTAAAAATCTGAGTCCTGAAACAGCATTTTATGCTAACCTAAGGAATAGAAGCATACAACGTTCTGGTGGGGCTTCAAGCAGAAACAATTCAAGGAGGGGTGTGGCAGTGACATCAACAACACAGGAGGATGAGGATGCTGCATTGGCTAGAAGGTTACATAGAGAAATTAATGAAGAAAGCCCAGGAACAACTCGAATGAGGACAAGACGAGGGGTTCCTACTAGCCAACATCAGGATGCAGCTTTGGCTCTAAGGTTGCAGAGAGAAGAGTTCATCCAAACTTTTAGGGAGAGTAGCCAGGAACAGACTATTAGGCTACCTTCATCGTCTTTTGCAAGAGAAAATTTGAGGGCTATGGCCTCTAGAGCCATGAATCCGAGGACTCGTGACAGAAGATGA 1128 0.4539 MQNKRMAVNEEQKRSPISQKIPLADSNVQNMVTLLSPRFKSAAAMAGWDEEALLLASLIVEDTPVRNSKHKKRPPLNSSSPSTNSSRARRTSQQPIPVILDLDAEETPKKESGRKKEERACVNNEGSKGAGDGNESKKKNPGGPSSSSALPCIDKLRDELSCAICLEICFEPSTTPCGHSFCRKCLRSAADKCGKKCPKCRQLISNGRSCTVNTVLWNTIQLLFPQEIEARKAVGSLNSREQGKNLSPETAFYANLRNRSIQRSGGASSRNNSRRGVAVTSTTQEDEDAALARRLHREINEESPGTTRMRTRRGVPTSQHQDAALALRLQREEFIQTFRESSQEQTIRLPSSSFARENLRAMASRAMNPRTRDRR 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g02074 375 MobiDBLite consensus disorder prediction 103 123 - -
Viun5g02074 375 MobiDBLite consensus disorder prediction 1 22 - -
Viun5g02074 375 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 106 231 IPR013083 -
Viun5g02074 375 MobiDBLite consensus disorder prediction 262 286 - -
Viun5g02074 375 ProSiteProfiles Zinc finger RING-type profile. 162 201 IPR001841 -
Viun5g02074 375 MobiDBLite consensus disorder prediction 262 321 - -
Viun5g02074 375 MobiDBLite consensus disorder prediction 74 93 - -
Viun5g02074 375 SUPERFAMILY RING/U-box 154 225 - -
Viun5g02074 375 SMART ring_2 162 200 IPR001841 -
Viun5g02074 375 Pfam Zinc finger, C3HC4 type (RING finger) 162 200 IPR018957 GO:0046872
Viun5g02074 375 MobiDBLite consensus disorder prediction 66 148 - -
Viun5g02074 375 ProSitePatterns Zinc finger RING-type signature. 177 186 IPR017907 -
Viun5g02074 375 MobiDBLite consensus disorder prediction 287 308 - -
Viun5g02074 375 PANTHER UNCHARACTERIZED 319 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g02074 Viun-Chr5 24796356 24798741 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g02074 78 204 C2H2 Transcription Factor Family AT5G39550 28.906 4.15e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g02074 - - gmx:102666585 512.301