Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g02073 ATGAAGTTCCCTAACATTCGTTTTCGTCACTCTAGCATTCACTTATCCCACGTTCCCAAATGCACCTTTGTACCCTACATCTCTACCAAATCCCAAACCCACTTTTTGTCCTCATTGCCACCGGTTTGCTCCGAAACCTTCCGAATCATTGCCCCAAAATCCAGGTTGCTCGGTCCCCTGTTCGCAAAACGGGTCGGGCTTTTGACATCAATTTTACCCGGTGGAAGCTGGTGGGCCTTGCCGGAGCTCCGGGAAGACGGCGTGGAGCCAACGGCGGCGTTGATTGCTCTCCGGCGAATATGGGAATTGGTCGCCGATGAGCGATGGGTCGCGTTTGTGGCGGTTGGGTCCCTTGTTATTGCTGCTCTTTCAGAGATCTCCATGCCAAGTATATTGGCAGCATCAATATTTTCAGCACAGAGTGGTGAGACTGTGGTGTTCTCTAGGAATGCACTGTTTTTACTTCTTTTGTGTGTAACTTCAGGGATATGCAGCGGCCTACGATGTGGCTGCTTTGGAATTTTGAATGTAACCTTGGTAAAGCATCTACGAGAAAACTTATATGCAACAATTCTTTTTCAGGACATCTCCTACTTTGATAAAGAAAGAGTTGGTGACTTGACAAGCAGGCTCACAGCAGATTGTCAACGATTATCCCATGTAATAGGAAATGATCTTCAGCTGATATTACGCAACACTTGTCAGGGGACTGGAGCAATACTTAATTTGATGGTTTTATCTTGGCCTCTAGCATTATCTGCCTTGGTGATTTGTTCTATTTTATCTGCAATTTTTCTTGTTTATGGCCAGTATCAGAGAAAGGCTGCAAAGTTAATCCACGATTTCACAGCTTGTGCAAATGACGTTGCTCTGGAGACACTTTCTTCAGTAAGAACTGTACGAGCTTATGGAACAGAAAAAAGAGAATTTGGAAGTGATATGGCACCTCCGCGTAGAACTCCTCAATCTTCTCAGGGCGACGTACCAGATATCGCGAGGGCGATAGAAGCTATGGTGACGGCTATGACTTAG 1032 0.4583 MKFPNIRFRHSSIHLSHVPKCTFVPYISTKSQTHFLSSLPPVCSETFRIIAPKSRLLGPLFAKRVGLLTSILPGGSWWALPELREDGVEPTAALIALRRIWELVADERWVAFVAVGSLVIAALSEISMPSILAASIFSAQSGETVVFSRNALFLLLLCVTSGICSGLRCGCFGILNVTLVKHLRENLYATILFQDISYFDKERVGDLTSRLTADCQRLSHVIGNDLQLILRNTCQGTGAILNLMVLSWPLALSALVICSILSAIFLVYGQYQRKAAKLIHDFTACANDVALETLSSVRTVRAYGTEKREFGSDMAPPRRTPQSSQGDVPDIARAIEAMVTAMT 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g02073 343 Pfam ABC transporter transmembrane region 116 309 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun5g02073 343 SUPERFAMILY ABC transporter transmembrane region 98 310 IPR036640 GO:0005524|GO:0016020
Viun5g02073 343 Gene3D ABC transporter type 1, transmembrane domain 92 312 IPR036640 GO:0005524|GO:0016020
Viun5g02073 343 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 112 310 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun5g02073 343 PANTHER ABC TRANSPORTER B FAMILY 103 310 IPR039421 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g02073 Viun-Chr5 24701386 24715281 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g02073 108 317 Calmodulin-binding Proteins AT2G36910 22.831 1.35e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g02073 - - pvu:PHAVU_008G153500g 511.916