Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g02062 ATGTCTTATAAACATGCATTGTCTCATCCACTCGCTGTTCTAGCTTCATTTTCAATATTCCTAGTGGTCCCTTCGTCTTGTTTCAACCCCAAAAATATTTTCAATGCTTCCATTGATTCATATTGGTCATCTGCTGTGGCTACTTGGTATGGACCTTCCAATGGGGATGGAAGTGAAGGTGGTGCTTGTGGTTATGGCAGAACTGTTGGGGAACCTCCATTCTCATCGATGATAGCTGCAGGAAGCCCTCCTTTGTTTGAATCAGGCAAAGGATGTGGTTCCTGTTTCGAGGTGAAGTGCACGGGGAATAAAGCATGCTCAGGCAACCCTGTGAGGGTAGTGATCACTGATGAGTGTCCTGGTTGTGGTTCCGACGCACATTTTGATTTGAGTGGTGCTGCTTTTGGTGCAATGGCAGGTCCAGGTGAAGCCGATCAGTTACGCAACGCTGGCAGAATAGCCGTTCAGTATAACAGGGTTGCATGCGAGTATCCTCGTACGTCTATAGTTTTTCATGTGGACTCGGGATCAAACCAAGACTATTTTGCAGTGATGGTTGAATATGAAGATGGAGATGGTGAACTTGAGAGAGTTGAACTAAAGGAAGATTTTTCAAATTCATGGGAAGCCATGCAACAATCTTGGGGTGCAATTTGGAAATATAACAAAGGGTCACAACTCAAAGCACCATTCTCTATAAGGCTAACCAACTTTAAGTTTAAGACTGTTGTGGCTACCAATGTCATCCCTGCTGGGTGGACACCTGGTCAAACTTATATATCAAATGTTAATTTTTGA 798 0.4386 MSYKHALSHPLAVLASFSIFLVVPSSCFNPKNIFNASIDSYWSSAVATWYGPSNGDGSEGGACGYGRTVGEPPFSSMIAAGSPPLFESGKGCGSCFEVKCTGNKACSGNPVRVVITDECPGCGSDAHFDLSGAAFGAMAGPGEADQLRNAGRIAVQYNRVACEYPRTSIVFHVDSGSNQDYFAVMVEYEDGDGELERVELKEDFSNSWEAMQQSWGAIWKYNKGSQLKAPFSIRLTNFKFKTVVATNVIPAGWTPGQTYISNVNF 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g02062 265 SMART dpbb_1 78 157 IPR007112 -
Viun5g02062 265 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 60 167 IPR007112 -
Viun5g02062 265 PRINTS Major pollen allergen Lol pI signature 139 154 IPR005795 GO:0005576|GO:0019953
Viun5g02062 265 PRINTS Major pollen allergen Lol pI signature 100 110 IPR005795 GO:0005576|GO:0019953
Viun5g02062 265 PRINTS Major pollen allergen Lol pI signature 171 186 IPR005795 GO:0005576|GO:0019953
Viun5g02062 265 PRINTS Major pollen allergen Lol pI signature 237 254 IPR005795 GO:0005576|GO:0019953
Viun5g02062 265 PRINTS Major pollen allergen Lol pI signature 117 132 IPR005795 GO:0005576|GO:0019953
Viun5g02062 265 PRINTS Major pollen allergen Lol pI signature 217 234 IPR005795 GO:0005576|GO:0019953
Viun5g02062 265 PRINTS Major pollen allergen Lol pI signature 80 91 IPR005795 GO:0005576|GO:0019953
Viun5g02062 265 PRINTS Major pollen allergen Lol pI signature 187 202 IPR005795 GO:0005576|GO:0019953
Viun5g02062 265 PRINTS Expansin/Lol pI family signature 59 77 IPR007118 GO:0005576
Viun5g02062 265 PRINTS Expansin/Lol pI family signature 41 56 IPR007118 GO:0005576
Viun5g02062 265 PRINTS Expansin/Lol pI family signature 82 100 IPR007118 GO:0005576
Viun5g02062 265 PRINTS Expansin/Lol pI family signature 247 261 IPR007118 GO:0005576
Viun5g02062 265 PRINTS Expansin/Lol pI family signature 150 166 IPR007118 GO:0005576
Viun5g02062 265 PRINTS Expansin/Lol pI family signature 208 222 IPR007118 GO:0005576
Viun5g02062 265 Pfam Lytic transglycolase 79 157 IPR009009 -
Viun5g02062 265 Gene3D - 27 163 IPR036908 -
Viun5g02062 265 SUPERFAMILY Barwin-like endoglucanases 37 165 IPR036908 -
Viun5g02062 265 Gene3D - 166 265 IPR036749 -
Viun5g02062 265 SUPERFAMILY PHL pollen allergen 168 261 IPR036749 -
Viun5g02062 265 CDD DPBB_EXPB_N 42 162 - -
Viun5g02062 265 PANTHER EXPANSIN-B3 21 265 - -
Viun5g02062 265 Pfam Expansin C-terminal domain 169 250 IPR007117 -
Viun5g02062 265 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 180 261 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g02062 Viun-Chr5 24522623 24523746 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g02062 25 265 Expansin Gene Family AT1G65680 56.855 5.52e-97 284
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g02062 - - gmx:548090 390.193