Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g02053 ATGACAGGGAGGTATTGTTACAAGGAAGTGCTTCCATTCATTGCAATGGTTGGCATAGAGTGCTCCAACGTTGGTGTGAACATTCTATTCAAAGCTGCAACTCAGAAGGGATTGAGTTATTATGCCTTCATCGCTTATTCATATCTCATCTCTGTTCTCTTTCTCCTTTTGCCTCTGCCCTTCGTCTTTCGCTGGTCAAGAGGCCTTCCACAGCTCAACCGCTCTCTCATCTTCAGAATTTTCCTCCTTGGAGTAATTGGAGTGACAGCTCAACTTTGTGGGTATAAGGGACTGAATTACACATCGCCTACGCTTGCGTCTGCTCTCAGCAACCTCATACCAGCTTTCACCTTCATATTGGCTATCATTTTCAGGATGGAAAAGGTAGCTTTGAGAAGCTCAAGCTCTCAGGCCAAAATCCTGGGTTCGGCCGTATCCATATTAGGTGCACTCATAGTTTTACTCTACAAGGGTTCCATAATCCTTTCAACTTCATCTCCTACGCTTCATTCTCCCATGGAATCCACAGCACAAACAAATTGGGTTCTTGGTGGATCCCTACTTGCCGTTGAGTATCTTTTGGTTCCAATCTGGTACATTATTCAGACCGATATTATGAAACAATACCCAGCAGAGCTTATTGTGGTGTTCCTGTACAACCTGAGTGGGACTCTGATATCTGCTCCAATTTGCTTGCTATTAGAAGAAAATTTGAGTGCTTGGAAGATAAATCCTGATATAACATTGATTGCTATTGTATATTCGGGTTTCTTCTGCACAGGCCTAAGTAGTTTGGTTCACACTTGGGGCATTCATCTTAAAGGCCCAGTTTATGTTTCAATCTTTAAGCCTCTGTCCATTGTGGTTGCAGCCGTTTCGAGTGTCGTCTTCCTTGGTGATGCTCTGTATTTTGGAACTGTTGTTGGAGCAGTGATACTCTCGTTTGGATTTTATGCTGTCATATGGGGTAATGCAAAAGAAGATGAATTGAGTGAGGACTTTGACATGCGTCCTTCATCAAGTAGTAAGAGCCCTTTGTTGGTGAGCTACACAGGGAAAAATAACGAAGAGACCACCCATTGTTGA 1086 0.4319 MTGRYCYKEVLPFIAMVGIECSNVGVNILFKAATQKGLSYYAFIAYSYLISVLFLLLPLPFVFRWSRGLPQLNRSLIFRIFLLGVIGVTAQLCGYKGLNYTSPTLASALSNLIPAFTFILAIIFRMEKVALRSSSSQAKILGSAVSILGALIVLLYKGSIILSTSSPTLHSPMESTAQTNWVLGGSLLAVEYLLVPIWYIIQTDIMKQYPAELIVVFLYNLSGTLISAPICLLLEENLSAWKINPDITLIAIVYSGFFCTGLSSLVHTWGIHLKGPVYVSIFKPLSIVVAAVSSVVFLGDALYFGTVVGAVILSFGFYAVIWGNAKEDELSEDFDMRPSSSSKSPLLVSYTGKNNEETTHC 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g02053 361 Pfam EamA-like transporter family 198 321 IPR000620 GO:0016020
Viun5g02053 361 Pfam EamA-like transporter family 25 154 IPR000620 GO:0016020
Viun5g02053 361 MobiDBLite consensus disorder prediction 333 361 - -
Viun5g02053 361 SUPERFAMILY Multidrug resistance efflux transporter EmrE 48 157 - -
Viun5g02053 361 PANTHER WAT1-RELATED PROTEIN 11 336 IPR030184 GO:0016020|GO:0022857
Viun5g02053 361 SUPERFAMILY Multidrug resistance efflux transporter EmrE 230 326 - -
Viun5g02053 361 MobiDBLite consensus disorder prediction 337 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g02053 Viun-Chr5 24402659 24407407 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g02053 4 350 Nodulin-like Gene Family AT5G40240 53.107 4.60e-133 383
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g02053 - - gmx:100805667 555.829