Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g02051 ATGAAATCTAAATTTGCAACTAAGGAGGACATAAATTCTTCACAGGCAACACTATCATCAAGTTACAACCAGGAGGAACTTGATGAAATGTTGGCAGCATCTATAGCTGCAGAGGAAAATGGAAAACATGCCAGAAAAGAAGTGCCGTATATAGTAATTAATCCTTCAGAGGAAGAACATGGTGCAGAAGAACAGATTCTACTGCCATCAGTTAATGCAGAAGTTGATATGGCCGTATTAGCTGCTTTGCCGCAGTCTATGCAACTCGATATTCTTGCACAGCTAAAAGGAAAGAAAAAAGAAGGGTTACTAAAGGAAGTTTACAACCATGAACAACATGATGTCGATTATCGGGGCAAGGGTAAAGGGGTTCTGCTCAGTGAAGCTGGCATGGTTGGTGGTAGCTCCGGACATGACAGTGTTGCATCAAGGACTGGGAATCAAGACTCAATTGACGAAATGTTGGCTGCATTTATTGCTCTGGAGGAAAATGACAAGTTAGTAAATAATGCATCAACTTCTGTTGGGGCTTCCACTTTGGAGGAAGAGGATGTTGACTATGACGAAGATGAAGAGATGATACTGCCAGCTGTGCATGGTGAAGTTGATCCACTTGTTTTAGCCTCATTGCCTCCATCAATGCAGCTGGACCTTCTTGTTCAGATGAGGGAGCGTTTAATTGCTGAGAACAGACAAAAGTATCAGAAAGTCAAAAAGGATCCAGCAAAATTCTCTGAGCTACAAATACAAGCTTACCTTAAAACTGTTGCTTTCAGACGGGAGATAAATGAAGTGCAGAAAGCTGCAGCTGGAGGAGGAGTAGAGGGTGTACAGACTTCACGGATTGCATCTGAAGCCAACAGAGAATATATATTTTCATCATCTTTTACTGGTGATAAACATGAACTTACCTCCACCAGCTTAGAGAAAAATAAAAGTACAAAACAGAAGGCACAAGGAGCACATCATTCTCAGAATCTTGCAAATGGCATTGTGGCTGGAAATGATTTTAATAAATCAAGTGAATTGGTTTGCAATGAACCTGGCGAGCCTTCTGATGAAAATATTCAGACATATCTTGACGAGAGAGGTCGATTTCGAGTAAGTAGATTGAGAGCAATGGGGATGCGTATGACCCGTGATATACAAAGAAATTTGGATTTGATGAAGGAGTTTGAGCAGGAAAGAGCACATGTGAACAAGGCTTCAAATATTGGAACAATGAAAAATGGAGAAAATAAGGGTTCATCAGAAAGTTCTGGGATCCAGCTTGTTGATAAATCAAAAGAGGTGAATGTTGACTTAGTTGGAGAGAATGTGCAGAATGAACAAAATATGCTAGACCAGAGTGCTTCTATAGATATATCTTTTGAATATGGTCACGAAAATGAGTTTGCAAATGGTGAGGATGATATATTTTCTAGTTTAGTAGGAGGAAATCCAGTGGCGATCTTTGGCACTGATGATTCTGCAGCAACAGTGCATCCTTCTCATTCTGATTGGGAAGAAGGAATTGTTGAAGGTAAGAGTACTGTTTTTCACAAACATGATAAGGTGGAATTGAAGCCTTCTGTTGCAGACGATGATAATAATAATGAAAGTGAAGTGGAATGGGAGGAAGGAGATTGTGATGGTGCTAACAGCAGCTTACTGTCAGGAAAATATGCATCCCGAGGGCAGTTGGAGGAGGAGTCCAATTTGCAAGAGGCAATAAGGAGAAGTCTTGAAAGTGCAGGGGATGGAAAACACAAATGTATGTCATTGGTTGATGTGCATTCAAATACTTATGAGAACAAATTGGATCATGATTTTGAACACGGTGATCATTCTGACCGAATGGCTTTAAATGAGAACACTGGGTTCCTGAATAATGAAAATAAAATGGAGGGACTCACTTTGTGTCGGGAAGATGGTACTGAAAAAAAGGAATTACATGAAACTGAAGATAAAAAGCATGATTTTGTTTCCGTAAATAATGCACAAACTTTCCCTTTTCATGGAAGTCCGTCAAAGCCATCTGTGACTTTTAGTTCAGATAAAACTGAGATATTGATTGACACAACATGCAGTAGGGACAGTCACCATTGTTCTGAAGATTCGATTTCAGATACAGATATAATGACCAAGGACCAGGTCCCGATGGTTGCAGAGAAGTTATTTGATAAACATGATAATGATAAAGTGTCTTTCTATCATAAGAATACATCCAAGGCTGTTCTAGTTGGCGCAACTGAAGAGGGAAAAAAAAACTATATTAATGAACCTGAACCATTTAGTAATTCTATTGACACTACCAAACCCACTATTCATTTGGTGGAGTCATCCTTGAAAGGAGTAACAGAAGACCTTATTGAGCCAAACTTGGCTTCAAAGGGAAATGACGGAAATTTCTTTGACACAGGGAACAGTAGCCATGGCAGTGATACGGTTAATAGCCTAGGGGGTTTTCATGCTCTAGCAACTGAGGTTAGCCTGGAGGAAGAAATTCAAATTCTTGGTCAAGAATATATTAACCTGGAGAATGAGCAGAGGAAGCTAGAGCGGAATGCAGAATCAGTAAACAGTGAATTATTCACTGAATGTCAGGAACTACTGCAAATGTTTGGCTTGCCTTATATTATTGCTCCAATGGAAGCAGAAGCTCAATGTGCATATTTGGAACTTGAGAAACTAGTTGATGGTGTTGTAACCGATGATTCAGATGTCCTTCTATTTGGGGCACGCAGTGTTTACAAAAATATATTTGATGACCGAAAATATGTAGAGACATACTTCATGGAGGACATTGAGAAGGAGCTTGGACTGACCAGAGAAAAATTAATACGCATGGCTCTACTTCTTGGGAGTGATTACACTGAAGGTGTAAGTGGGATTGGCATCGTTAATGCTATTGAGGTTTTGAATGCATTCCCTGAGGAAGAGGGCCTCTTGAAATTCCGGAAATGGGTTGAGTCACCAGATCCCACCATCCTTGGAAGGTTGGATGCAAAAACTGGATCAAATACCAAAAAGAAAGGAGCAAAAGATAAGATAAATTCCTTAAATTGTGATGTAAAAGAGTCTCCATCAGAGCAGAACCTCCCCCATTCCCTAGAGGAAAATGAGTTGCCAGATTACATTCAAGAAACAAGGCAAATTTTCTTCAATAAGCATAGAAATGTTAGCAAGAATTGGCATATCCCTTCTTCTTTTCCAAGTGAAACAGTTATATCTGCTTATTGTTCTCCACAAGTTGATAAATCAACCGAGCCTTTCACATGGGGAAAGCCAGATCATCTTGTTCTTCGGAAATTGTGCTGGGAGAAATTTGGCTGGATTGGCCAGAAAGCAGATGAATTGCTATTACCTGTGTTAAAGGAGTATAATAAACGTGAGACTCAATTGCGATTGGAAGCATTTTACAGTTTTAATGAGAGATTTGCAAAAATCCGTAGCAAAAGAATTAAGAAGGCAGTAAAAGGAATAACTGGTAAGCTGCCTTCAAATATGATAGATGATTCTGCGGAGGAGTTGTCCAAGAGTAGGAAGATTGGGGGAGAACCCGAGGATAGCACATCAAAGATTTCAGGGGGAACAGACAAAAGTCTTGAACATCAAAGGAAATCAATAAAACAGTCAACGAAAAGGAAGACTGATACTATTGCCAAGGAACAGTCAAAGAAAAAGAAAGTCAATGATGATCCGTCTTCAGCACCTGGTACATCAGAGATGGAGAATTTACAGCCAAGTATACAGACAGAAGAACAGTGTGATGGTAAGGCATTAGTTCGGAATACAAGTGGCCGAGGAAGACATAGAGGTATGGGAATAAAAAGAGGAAGGGACAAGGAGAATCTCAGGTTTGAATCCTCATCTGCTAGCAGTGACATTGATGATCAGGGACCAAGAGTGCATGTGGATAAGGTTCCAAAACACGTGAGAAAGTCATTGCGATCTCGGAAACCTGTCAACTATTCTGTCGAAGATCCTGAAGATGAAGATGCCGATGATGTATTTGATCATAGTAATCAGACTGGTCCAACTGAAGAAAATGTATCTAAGATTCATGCTGCATCTGAAGATGGTCCAACAGATTTCAGTGCAATGAATTTTCCTTCGAGGGAGAACTCGCCAACCGACCCTTTCAAGTCAGAAGGTCCGTTTTTCATGCATGCAGGTGAAACTAATGATCCTAGTACTGGCAATCATGATTCTTCTACTGGCAATCATGACTCTTCTGATGAGTACCTTAAAATGGGAGGTGGATTCTGTTTAGATGATGGTGACACAGACAAGCCCGATACAATTGACGATGTCAATACTGCCACAGTGGATTCTACTCAAGACTTTTCACACTTTTCTGATTGTTTGGATGAAACTAACCGTGATAAAAATAGTTCAGATATATTATTTTCTGGCACTGAAAAGTCTGAAAATGGGATAGGTGGTGGAGGAGACTTTTATAAATTTGGTATAGAGCCAAATGACCTTGTAAATACTAGTAGTTATGATCATTCTGACATAGAGATCTTGAAACCTGAGAATGCTCATAACAATAGTGGAGCCTCCGCTGGAGTTTTCAGTGGTATGCCTTTTTTGAGGAAAAGAAAGAAAAAGTGA 4599 0.3988 MKSKFATKEDINSSQATLSSSYNQEELDEMLAASIAAEENGKHARKEVPYIVINPSEEEHGAEEQILLPSVNAEVDMAVLAALPQSMQLDILAQLKGKKKEGLLKEVYNHEQHDVDYRGKGKGVLLSEAGMVGGSSGHDSVASRTGNQDSIDEMLAAFIALEENDKLVNNASTSVGASTLEEEDVDYDEDEEMILPAVHGEVDPLVLASLPPSMQLDLLVQMRERLIAENRQKYQKVKKDPAKFSELQIQAYLKTVAFRREINEVQKAAAGGGVEGVQTSRIASEANREYIFSSSFTGDKHELTSTSLEKNKSTKQKAQGAHHSQNLANGIVAGNDFNKSSELVCNEPGEPSDENIQTYLDERGRFRVSRLRAMGMRMTRDIQRNLDLMKEFEQERAHVNKASNIGTMKNGENKGSSESSGIQLVDKSKEVNVDLVGENVQNEQNMLDQSASIDISFEYGHENEFANGEDDIFSSLVGGNPVAIFGTDDSAATVHPSHSDWEEGIVEGKSTVFHKHDKVELKPSVADDDNNNESEVEWEEGDCDGANSSLLSGKYASRGQLEEESNLQEAIRRSLESAGDGKHKCMSLVDVHSNTYENKLDHDFEHGDHSDRMALNENTGFLNNENKMEGLTLCREDGTEKKELHETEDKKHDFVSVNNAQTFPFHGSPSKPSVTFSSDKTEILIDTTCSRDSHHCSEDSISDTDIMTKDQVPMVAEKLFDKHDNDKVSFYHKNTSKAVLVGATEEGKKNYINEPEPFSNSIDTTKPTIHLVESSLKGVTEDLIEPNLASKGNDGNFFDTGNSSHGSDTVNSLGGFHALATEVSLEEEIQILGQEYINLENEQRKLERNAESVNSELFTECQELLQMFGLPYIIAPMEAEAQCAYLELEKLVDGVVTDDSDVLLFGARSVYKNIFDDRKYVETYFMEDIEKELGLTREKLIRMALLLGSDYTEGVSGIGIVNAIEVLNAFPEEEGLLKFRKWVESPDPTILGRLDAKTGSNTKKKGAKDKINSLNCDVKESPSEQNLPHSLEENELPDYIQETRQIFFNKHRNVSKNWHIPSSFPSETVISAYCSPQVDKSTEPFTWGKPDHLVLRKLCWEKFGWIGQKADELLLPVLKEYNKRETQLRLEAFYSFNERFAKIRSKRIKKAVKGITGKLPSNMIDDSAEELSKSRKIGGEPEDSTSKISGGTDKSLEHQRKSIKQSTKRKTDTIAKEQSKKKKVNDDPSSAPGTSEMENLQPSIQTEEQCDGKALVRNTSGRGRHRGMGIKRGRDKENLRFESSSASSDIDDQGPRVHVDKVPKHVRKSLRSRKPVNYSVEDPEDEDADDVFDHSNQTGPTEENVSKIHAASEDGPTDFSAMNFPSRENSPTDPFKSEGPFFMHAGETNDPSTGNHDSSTGNHDSSDEYLKMGGGFCLDDGDTDKPDTIDDVNTATVDSTQDFSHFSDCLDETNRDKNSSDILFSGTEKSENGIGGGGDFYKFGIEPNDLVNTSSYDHSDIEILKPENAHNNSGASAGVFSGMPFLRKRKKK 1532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g02051 1532 PANTHER DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS-RELATED 14 96 - -
Viun5g02051 1532 FunFam DNA repair protein UVH3 935 992 - -
Viun5g02051 1532 MobiDBLite consensus disorder prediction 302 325 - -
Viun5g02051 1532 SUPERFAMILY PIN domain-like 840 950 IPR029060 -
Viun5g02051 1532 MobiDBLite consensus disorder prediction 1507 1532 - -
Viun5g02051 1532 MobiDBLite consensus disorder prediction 1193 1227 - -
Viun5g02051 1532 MobiDBLite consensus disorder prediction 8 23 - -
Viun5g02051 1532 Coils Coil 822 856 - -
Viun5g02051 1532 MobiDBLite consensus disorder prediction 1228 1248 - -
Viun5g02051 1532 MobiDBLite consensus disorder prediction 309 325 - -
Viun5g02051 1532 CDD PIN_XPG_RAD2 852 936 - -
Viun5g02051 1532 MobiDBLite consensus disorder prediction 1 23 - -
Viun5g02051 1532 MobiDBLite consensus disorder prediction 523 543 - -
Viun5g02051 1532 Gene3D - 935 1049 - -
Viun5g02051 1532 Pfam Ubiquitin binding region 69 94 IPR025527 -
Viun5g02051 1532 Pfam Ubiquitin binding region 197 226 IPR025527 -
Viun5g02051 1532 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 865 882 IPR006084 -
Viun5g02051 1532 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 886 906 IPR006084 -
Viun5g02051 1532 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 940 955 IPR006084 -
Viun5g02051 1532 CDD H3TH_XPG 938 1080 - -
Viun5g02051 1532 SMART HhH_4 937 970 IPR008918 GO:0003677|GO:0003824
Viun5g02051 1532 Gene3D - 819 934 - -
Viun5g02051 1532 SMART xpgineu 866 935 IPR006086 GO:0004518
Viun5g02051 1532 MobiDBLite consensus disorder prediction 1168 1182 - -
Viun5g02051 1532 ProSitePatterns XPG protein signature 2. 869 883 IPR019974 GO:0016788
Viun5g02051 1532 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 935 1142 IPR036279 -
Viun5g02051 1532 Pfam XPG I-region 869 950 IPR006086 GO:0004518
Viun5g02051 1532 MobiDBLite consensus disorder prediction 405 424 - -
Viun5g02051 1532 MobiDBLite consensus disorder prediction 1158 1408 - -
Viun5g02051 1532 FunFam DNA repair protein UVH3 816 934 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g02051 Viun-Chr5 24326108 24335667 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g02051 860 977 Core DNA Replication Machinery Family AT5G26680 35.537 4.96e-13 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g02051 K10846 - gmx:100820295 2213.34