Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g02050 ATGGGAGTCCACGGTCTCTGGGAACTACTCTCCCCCGTCGGTCGCCGGGTCTCCGTCGAAACCCTCGCCGGGAAAACCCTCGCCGTTGATGCGAGCATATGGATGGTGCAATTTATGAAAGCGATGCGCGACGAGAAGGGTGAAATGGTTCGCAACGCCCATTTGCTTGGCTTTTTCCGACGCATTTGCAAGCTTCTGTTCCTCCGCACCAAGCCGGTCTTTGTCTTCGACGGCGGGACCCCTGCCCTCAAGCGCCGCACCGTCATTGCCCGCCGCCGCCAGCGCGAAAATGCCCAAGCTAAAGTCCGCAAAACTGCGGAGAAATTGCTGCTCAATCATTTAAAAACACTAAGGTTGAAGGAACTGGCTGATGATATCAAGAGCCAGAGGATGCAGAAGAATAGTAATACTAAGGGTCAGAATGGATCTAATCAGAAGGACTTTGTTTATAGTGATTCAAAAGGAAGTCACGTGAAAGAGCTAGATGAAATGGCTGCAGCTAAATTTGCAACTAAGGAGGACATAAATTCTTCACAGGCAACACTATCATCAAGTTACAACCAGGAGGAACTTGATGAAATGTTGGCAGCATCTATAGCTGCAGAGGAAAATGGAAAACATGCCAGAAAAGAAGTGCCGTATATAGTAATTAATCCTTCAGAGGAAGAACATGGTGCAGAAGAACAGATTCTACTGCCATCAGTTAATGCAGAAGTTGATATGGCCGTATTAGCTGCTTTGCCGCAGTCTATGCAACTCGATATTCTTGCACAGCTAAAAGGAAAGAAAAAAGAAGGGTTACTAAAGGAAGTTTACAACCATGAACAACATGATGTCGATTATCGGGGCAAGGGTAAAGGGGTTCTGCTCAGTGAAGCTGGCATGGTTGGTGGTAGCTCCGGACATGACAGTGTTGCATCAAGGACTGGGAATCAAGACTCAATTGACGAAATGTTGGCTGCATTTATTGCTCTGGAGGAAAATGACAAGTTAGTAAATAATGCATCAACTTCTGTTGGGGCTTCCACTTTGGAGGAAGAGGATGTTGACTATGACGAAGATGAAGAGATGATACTGCCAGCTGTGCATGGTGAAGTTGATCCACTTGTTTTAGCCTCATTGCCTCCATCAATGCAGCTGGACCTTCTTGTTCAGATGAGGGAGCGTTTAATTGCTGAGAACAGACAAAAGTATCAGAAAGTCAAAAAGGATCCAGCAAAATTCTCTGAGCTACAAATACAAGCTTACCTTAAAACTGTTGCTTTCAGACGGGAGATAAATGAAGTGCAGAAAGCTGCAGCTGGAGGAGGAGTAGAGGGTGTACAGACTTCACGGATTGCATCTGAAGCCAACAGAGAATATATATTTTCATCATCTTTTACTGGTGATAAACATGAACTTACCTCCACCAGCTTAGAGAAAAATAAAAGTACAAAACAGAAGGCACAAGGAGCACATCATTCTCAGAATCTTGCAAATGGCATTGTGGCTGGAAATGATTTTAATAAATCAAGTGAATTGGTTTGCAATGAACCTGGCGAGCCTTCTGATGAAAATATTCAGACATATCTTGACGAGAGAGGTCGATTTCGAGTAAGTAGATTGAGAGCAATGGGGATGCGTATGACCCGTGATATACAAAGAAATTTGGATTTGATGAAGGAGTTTGAGCAGGAAAGAGCACATGTGAACAAGGCTTCAAATATTGGAACAATGAAAAATGGAGAAAATAAGGGTTCATCAGAAAGTTCTGGGATCCAGCTTGTTGATAAATCAAAAGAGGTGAATGTTGACTTAGTTGGAGAGAATGTGCAGAATGAACAAAATATGCTAGACCAGAGTGCTTCTATAGATATATCTTTTGAATATGGTCACGAAAATGAGTTTGCAAATGGTGAGGATGATATATTTTCTAGTTTAGTAGGAGGAAATCCAGTGGCGATCTTTGGCACTGATGATTCTGCAGCAACAGTGCATCCTTCTCATTCTGATTGGGAAGAAGGAATTGTTGAAGGTAAGAGTACTGTTTTTCACAAACATGATAAGGTGGAATTGAAGCCTTCTGTTGCAGACGATGATAATAATAATGAAAGTGAAGTGGAATGGGAGGAAGGAGATTGTGATGGTGCTAACAGCAGCTTACTGTCAGGAAAATATGCATCCCGAGGGCAGTTGGAGGAGGAGTCCAATTTGCAAGAGGCAATAAGGAGAAGTCTTGAAAGTGCAGGGGATGGAAAACACAAATGTATGTCATTGGTTGATGTGCATTCAAATACTTATGAGAACAAATTGGATCATGATTTTGAACACGGTGATCATTCTGACCGAATGGCTTTAAATGAGAACACTGGGTTCCTGAATAATGAAAATAAAATGGAGGGACTCACTTTGTGTCGGGAAGATGGTACTGAAAAAAAGGAATTACATGAAACTGAAGATAAAAAGCATGATTTTGTTTCCGTAAATAATGCACAAACTTTCCCTTTTCATGGAAGTCCGTCAAAGCCATCTGTGACTTTTAGTTCAGATAAAACTGAGATATTGATTGACACAACATGCAGTAGGGACAGTCACCATTGTTCTGAAGATTCGATTTCAGATACAGATATAATGACCAAGGACCAGGTCCCGATGGTTGCAGAGAAGTTATTTGATAAACATGATAATGATAAAGTGTCTTTCTATCATAAGAATACATCCAAGGCTGTTCTAGTTGGCGCAACTGAAGAGGGAAAAAAAAACTATATTAATGAACCTGAACCATTTAGTAATTCTATTGACACTACCAAACCCACTATTCATTTGGTGGAGTCATCCTTGAAAGGAGTAACAGAAGACCTTATTGAGCCAAACTTGGCTTCAAAGGGAAATGACGGAAATTTCTTTGACACAGGGAACAGTAGCCATGGCAGTGATACGGTTAATAGCCTAGGGGGTTTTCATGCTCTAGCAACTGAGGTTAGCCTGGAGGAAGAAATTCAAATTCTTGGTCAAGAATATATTAACCTGGAGAATGAGCAGAGGAAGCTAGAGCGGAATGCAGAATCAGTAAACAGTGAATTATTCACTGAATGTCAGGAACTACTGCAAATGTTTGGCTTGCCTTATATTATTGCTCCAATGGAAGCAGAAGCTCAATGTGCATATTTGGAACTTGAGAAACTAGTTGATGGTGTTGTAACCGATGATTCAGATGTCCTTCTATTTGGGGCACGCAGTGTTTACAAAAATATATTTGATGACCGAAAATATGTAGAGACATACTTCATGGAGGACATTGAGAAGGAGCTTGGACTGACCAGAGAAAAATTAATACGCATGGCTCTACTTCTTGGGAGTGATTACACTGAAGGTGTAAGTGGGATTGGCATCGTTAATGCTATTGAGGTTTTGAATGCATTCCCTGAGGAAGAGGGCCTCTTGAAATTCCGGAAATGGGTTGAGTCACCAGATCCCACCATCCTTGGAAGGTTGGATGCAAAAACTGGATCAAATACCAAAAAGAAAGGAGCAAAAGATAAGATAAATTCCTTAAATTGTGATGTAAAAGAGTCTCCATCAGAGCAGAACCTCCCCCATTCCCTAGAGGAAAATGAGTTGCCAGATTACATTCAAGAAACAAGGCAAATTTTCTTCAATAAGCATAGAAATGTTAGCAAGAATTGGCATATCCCTTCTTCTTTTCCAAGTGAAACAGTTATATCTGCTTATTGTTCTCCACAAGTTGATAAATCAACCGAGCCTTTCACATGGGGAAAGCCAGATCATCTTGTTCTTCGGAAATTGTGCTGGGAGAAATTTGGCTGGATTGGCCAGAAAGCAGATGAATTGCTATTACCTGTGTTAAAGGAGTATAATAAACGTGAGACTCAATTGCGATTGGAAGCATTTTACAGTTTTAATGAGAGATTTGCAAAAATCCGTAGCAAAAGAATTAAGAAGGCAGTAAAAGGAATAACTGGTAAGCTGCCTTCAAATATGATAGATGATTCTGCGGAGGAGTTGTCCAAGAGTAGGAAGATTGGGGGAGAACCCGAGGATAGCACATCAAAGATTTCAGGGGGAACAGACAAAAGTCTTGAACATCAAAGGAAATCAATAAAACAGTCAACGAAAAGGAAGACTGATACTATTGCCAAGGAACAGTCAAAGAAAAAGAAAGTCAATGATGATCCGTCTTCAGCACCTGGTACATCAGAGATGGAGAATTTACAGCCAAGTATACAGACAGAAGAACAGTGTGATGGTAAGGCATTAGTTCGGAATACAAGTGGCCGAGGAAGACATAGAGGTATGGGAATAAAAAGAGGAAGGGACAAGGAGAATCTCAGGTTTGAATCCTCATCTGCTAGCAGTGACATTGATGATCAGGGACCAAGAGTGCATGTGGATAAGGTTCCAAAACACGTGAGAAAGTCATTGCGATCTCGGAAACCTGTCAACTATTCTGTCGAAGATCCTGAAGATGAAGATGCCGATGATGTATTTGATCATAGTAATCAGACTGGTCCAACTGAAGAAAATGTATCTAAGATTCATGCTGCATCTGAAGATGGTCCAACAGATTTCAGTGCAATGAATTTTCCTTCGAGGGAGAACTCGCCAACCGACCCTTTCAAGTCAGAAGGTCCGTTTTTCATGCATGCAGGTGAAACTAATGATCCTAGTACTGGCAATCATGATTCTTCTACTGGCAATCATGACTCTTCTGATGAGTACCTTAAAATGGGAGGTGGATTCTGTTTAGATGATGGTGACACAGACAAGCCCGATACAATTGACGATGTCAATACTGCCACAGTGGATTCTACTCAAGACTTTTCACACTTTTCTGATTGTTTGGATGAAACTAACCGTGATAAAAATAGTTCAGATATATTATTTTCTGGCACTGAAAAGTCTGAAAATGGGATAGGTGGTGGAGGAGACTTTTATAAATTTGGTATAGAGCCAAATGACCTTGTAAATACTAGTAGTTATGATCATTCTGACATAGAGATCTTGAAACCTGAGAATGCTCATAACAATAGTGGAGCCTCCGCTGGAGTTTTCAGTGGTATGCCTTTTTTGAGGAAAAGAAAGAAAAAGTGA 5091 0.4111 MGVHGLWELLSPVGRRVSVETLAGKTLAVDASIWMVQFMKAMRDEKGEMVRNAHLLGFFRRICKLLFLRTKPVFVFDGGTPALKRRTVIARRRQRENAQAKVRKTAEKLLLNHLKTLRLKELADDIKSQRMQKNSNTKGQNGSNQKDFVYSDSKGSHVKELDEMAAAKFATKEDINSSQATLSSSYNQEELDEMLAASIAAEENGKHARKEVPYIVINPSEEEHGAEEQILLPSVNAEVDMAVLAALPQSMQLDILAQLKGKKKEGLLKEVYNHEQHDVDYRGKGKGVLLSEAGMVGGSSGHDSVASRTGNQDSIDEMLAAFIALEENDKLVNNASTSVGASTLEEEDVDYDEDEEMILPAVHGEVDPLVLASLPPSMQLDLLVQMRERLIAENRQKYQKVKKDPAKFSELQIQAYLKTVAFRREINEVQKAAAGGGVEGVQTSRIASEANREYIFSSSFTGDKHELTSTSLEKNKSTKQKAQGAHHSQNLANGIVAGNDFNKSSELVCNEPGEPSDENIQTYLDERGRFRVSRLRAMGMRMTRDIQRNLDLMKEFEQERAHVNKASNIGTMKNGENKGSSESSGIQLVDKSKEVNVDLVGENVQNEQNMLDQSASIDISFEYGHENEFANGEDDIFSSLVGGNPVAIFGTDDSAATVHPSHSDWEEGIVEGKSTVFHKHDKVELKPSVADDDNNNESEVEWEEGDCDGANSSLLSGKYASRGQLEEESNLQEAIRRSLESAGDGKHKCMSLVDVHSNTYENKLDHDFEHGDHSDRMALNENTGFLNNENKMEGLTLCREDGTEKKELHETEDKKHDFVSVNNAQTFPFHGSPSKPSVTFSSDKTEILIDTTCSRDSHHCSEDSISDTDIMTKDQVPMVAEKLFDKHDNDKVSFYHKNTSKAVLVGATEEGKKNYINEPEPFSNSIDTTKPTIHLVESSLKGVTEDLIEPNLASKGNDGNFFDTGNSSHGSDTVNSLGGFHALATEVSLEEEIQILGQEYINLENEQRKLERNAESVNSELFTECQELLQMFGLPYIIAPMEAEAQCAYLELEKLVDGVVTDDSDVLLFGARSVYKNIFDDRKYVETYFMEDIEKELGLTREKLIRMALLLGSDYTEGVSGIGIVNAIEVLNAFPEEEGLLKFRKWVESPDPTILGRLDAKTGSNTKKKGAKDKINSLNCDVKESPSEQNLPHSLEENELPDYIQETRQIFFNKHRNVSKNWHIPSSFPSETVISAYCSPQVDKSTEPFTWGKPDHLVLRKLCWEKFGWIGQKADELLLPVLKEYNKRETQLRLEAFYSFNERFAKIRSKRIKKAVKGITGKLPSNMIDDSAEELSKSRKIGGEPEDSTSKISGGTDKSLEHQRKSIKQSTKRKTDTIAKEQSKKKKVNDDPSSAPGTSEMENLQPSIQTEEQCDGKALVRNTSGRGRHRGMGIKRGRDKENLRFESSSASSDIDDQGPRVHVDKVPKHVRKSLRSRKPVNYSVEDPEDEDADDVFDHSNQTGPTEENVSKIHAASEDGPTDFSAMNFPSRENSPTDPFKSEGPFFMHAGETNDPSTGNHDSSTGNHDSSDEYLKMGGGFCLDDGDTDKPDTIDDVNTATVDSTQDFSHFSDCLDETNRDKNSSDILFSGTEKSENGIGGGGDFYKFGIEPNDLVNTSSYDHSDIEILKPENAHNNSGASAGVFSGMPFLRKRKKK 1696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g02050 1696 MobiDBLite consensus disorder prediction 687 707 - -
Viun5g02050 1696 MobiDBLite consensus disorder prediction 1332 1346 - -
Viun5g02050 1696 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 1099 1306 IPR036279 -
Viun5g02050 1696 ProSitePatterns XPG protein signature 1. 70 84 IPR019974 GO:0016788
Viun5g02050 1696 Gene3D - 1099 1213 - -
Viun5g02050 1696 SMART xpgn3 1 98 IPR006085 GO:0004518
Viun5g02050 1696 MobiDBLite consensus disorder prediction 129 148 - -
Viun5g02050 1696 Gene3D - 983 1098 - -
Viun5g02050 1696 PRINTS Xeroderma pigmentosum group G protein signature 96 118 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Viun5g02050 1696 PRINTS Xeroderma pigmentosum group G protein signature 54 77 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Viun5g02050 1696 PRINTS Xeroderma pigmentosum group G protein signature 2 19 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Viun5g02050 1696 ProSitePatterns XPG protein signature 2. 1033 1047 IPR019974 GO:0016788
Viun5g02050 1696 MobiDBLite consensus disorder prediction 1322 1572 - -
Viun5g02050 1696 SMART HhH_4 1101 1134 IPR008918 GO:0003677|GO:0003824
Viun5g02050 1696 FunFam DNA repair protein UVH3 1 146 - -
Viun5g02050 1696 Gene3D - 1 154 - -
Viun5g02050 1696 Pfam XPG I-region 1033 1114 IPR006086 GO:0004518
Viun5g02050 1696 Pfam Ubiquitin binding region 361 390 IPR025527 -
Viun5g02050 1696 Pfam Ubiquitin binding region 233 258 IPR025527 -
Viun5g02050 1696 FunFam DNA repair protein UVH3 1099 1156 - -
Viun5g02050 1696 MobiDBLite consensus disorder prediction 569 588 - -
Viun5g02050 1696 MobiDBLite consensus disorder prediction 127 148 - -
Viun5g02050 1696 FunFam DNA repair protein UVH3 980 1098 - -
Viun5g02050 1696 SMART xpgineu 1030 1099 IPR006086 GO:0004518
Viun5g02050 1696 Pfam XPG N-terminal domain 1 97 IPR006085 GO:0004518
Viun5g02050 1696 SUPERFAMILY PIN domain-like 2 1114 IPR029060 -
Viun5g02050 1696 CDD PIN_XPG_RAD2 2 92 - -
Viun5g02050 1696 MobiDBLite consensus disorder prediction 1357 1391 - -
Viun5g02050 1696 MobiDBLite consensus disorder prediction 466 489 - -
Viun5g02050 1696 PANTHER DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS-RELATED 1 260 - -
Viun5g02050 1696 MobiDBLite consensus disorder prediction 1671 1696 - -
Viun5g02050 1696 Coils Coil 986 1020 - -
Viun5g02050 1696 MobiDBLite consensus disorder prediction 473 489 - -
Viun5g02050 1696 CDD PIN_XPG_RAD2 1016 1100 - -
Viun5g02050 1696 MobiDBLite consensus disorder prediction 1392 1412 - -
Viun5g02050 1696 CDD H3TH_XPG 1102 1244 - -
Viun5g02050 1696 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 72 91 IPR006084 -
Viun5g02050 1696 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g02050 Viun-Chr5 24326108 24336883 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g02050 1024 1141 Core DNA Replication Machinery Family AT5G26680 35.537 5.89e-13 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g02050 K10846 - gmx:100820295 2505.71