Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g02048 ATGAATGGTAAGTGGTCCTTTGACCATACCCATTTGAAGATGGCTAGGATTCAGCATCAAATCCAACAAAAAGATGGTTACTTGAGCTATCCACCACCGGTTTTGCCTCCCCCTTCACCCCCAATTTGGGGTGCATTCCACAAAGAATCAATGTCTTCTTCTTCATCATCATCATCAACTCCCTCACCACCCTCACCTTCATCCTCTGGTGCTAGAATTAGTCCTGCTGTGCTTTTCATCATTGTGATTCTGGCTGTTCTATTTTTCATCTCTGGCCTGCTCCACCTGCTTGTTAGATTTCTCATGAAGAATTCTTCTTCCTCAGCATCTTCCCAATCCAATAGGAACCATGAAAATGCAACCTCTGATGCTCTTCAAAGGCAGCTGCAACAACTGTTCCATCTTCATGATTCTGGTCTGGACCAGGCTTTTATTGATGGACTTCCTGTTTTCCAATACAAGGAGATAAAGGGGTTGAAGGAGCCATTTGATTGTGCTGTTTGTCTCTGTGAGTTTTCTGAAAAGGATAAGCTCAGGTTGCTCCCTATGTGCAGCCATGCCTTTCATATCAGTTGTATAGACACCTGGCTTTTGTCCAATTCCTCATGCCCTCTTTGCAGGGGTACCCTCCTTACTCCTGGCTTTTCCCTTGAAAATCCAGTGTTTGATTTTGATGATTTGAGGGATGATAATGGCGAACATGAATTCACAACTAGGCAGAAAACGGTTGAAATTGAAGAAACTGTAGTAGAGAAGGGGGTTTTCCCTGTGAGACTTGGCAAATTCAGAAGACTTGATGTGGAGGCAGAGGTGGCTGCAGGAGGAGAGACTAGTAGCAATAATTTGGATGCCAGAAGATGTTACTCCATGGGATCTTATCAGTACGTGCTTGGGAAGTCAGACCTCAGAATAACCTTGAGCCATGACCGAGAAGGTCGACGTGATGCACAGTTATTGAAAGGAACAGAAAACTTAGAGAGACTTTCAGTTGAGGGGGATATTGAAGCAAAGAAGATTACAAGTGTGTGTAAAGGTGAGAGCTTTTCTGTTTCCAAAATCTGGCAGTGGTCACAGAAGGGAAAATTTTCCGTTTCTTCTGATACCCAGATGAATATGCCCTCTTCTCTTATCACGGATTTGCCTTGGATGAGAGAAACAAGAAGGACATGA 1170 0.4376 MNGKWSFDHTHLKMARIQHQIQQKDGYLSYPPPVLPPPSPPIWGAFHKESMSSSSSSSSTPSPPSPSSSGARISPAVLFIIVILAVLFFISGLLHLLVRFLMKNSSSSASSQSNRNHENATSDALQRQLQQLFHLHDSGLDQAFIDGLPVFQYKEIKGLKEPFDCAVCLCEFSEKDKLRLLPMCSHAFHISCIDTWLLSNSSCPLCRGTLLTPGFSLENPVFDFDDLRDDNGEHEFTTRQKTVEIEETVVEKGVFPVRLGKFRRLDVEAEVAAGGETSSNNLDARRCYSMGSYQYVLGKSDLRITLSHDREGRRDAQLLKGTENLERLSVEGDIEAKKITSVCKGESFSVSKIWQWSQKGKFSVSSDTQMNMPSSLITDLPWMRETRRT 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g02048 389 FunFam RING-H2 finger protein ATL46 127 212 - -
Viun5g02048 389 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 140 212 IPR013083 -
Viun5g02048 389 SUPERFAMILY RING/U-box 144 213 - -
Viun5g02048 389 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 68 354 - -
Viun5g02048 389 MobiDBLite consensus disorder prediction 46 67 - -
Viun5g02048 389 ProSiteProfiles Zinc finger RING-type profile. 165 207 IPR001841 -
Viun5g02048 389 MobiDBLite consensus disorder prediction 48 67 - -
Viun5g02048 389 Pfam Ring finger domain 164 207 IPR001841 -
Viun5g02048 389 SMART ring_2 165 206 IPR001841 -
Viun5g02048 389 CDD RING-H2_EL5-like 164 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g02048 Viun-Chr5 24249189 24251453 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g02048 62 361 C3H Transcription Factor Family AT2G18650 43.195 4.44e-59 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g02048 - - cave:132183306 511.531