Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g02044 ATGTATAGCATAATATCGACGCCGGCGTCTAAGTTCCGCCAGTTCAGGCGACTCCGATCCCGACCGAAGACAACAACAGCGACAGAGGAGGAGCACGCGTTTCAAATCCTATGGCGGCACCAGATACTGGACCCCGACAGCGACATCGTGGCGTATTGGAACAAGGTGTTTCTCGTGACAAGCCTCCTCGCCCTCTTCGTCGACCCTCTCTACTTCTTCCTCCCCACAGTGGGTGGCCCCGCCTGCTTGCAGGCCGACCCCAAACTCAGCATCATCGTCACCATCATCCGCTCCTTCGCTGACCTCTTCTACGTCCTCCACATGCTCATGAAGTTCCGTACCGCCTTCGTCGCCCCCAACTCTAGAATCTTCGGCCGCGGTGACCTCGTCATGGACTCCCGCGAAATCGCCACGCGTTACCTCAGATCCGATTTTGTCATTGACCTCGCCGCCACCATCCCTCTCCCCCAGATTGTGATTTGGTTGGTGATTCCAGCAAGCAGAAACGCAAGAACTGATCATGCCAACAATACTCTTGCTCTTTTTGTTCTTATTCAATATGTTCCTAGGTTGTTTCTTATCTTTCATTTGAACCAGCGTATTCAGAAAACCACTGGCGTTATTGCCAAGACTCCCTGGATTGGAGCCGCATACAATCTTATTCTCTACATGCTAGCCAGCCATGTTACAGGAGCGACTTGGTATCTATCGTCAATAGGGAGGCAGTTTAATTGCTGGAAAACGCAGTGCCAAATAGAGAACAAATCACATACCCTCTCTTGCTTTTCAAGTTATCTTGATTGTAATAGTTTGAACGCCCCTGATAGGCAATACTGGCTAAACATCACCCGTGTAATCACCAAATGTGACGCGAAGAGTAAAATCAACGTCAAATATAAATTTGGGATGTTCGCAGAGGCTTTCCTGAACGATGTTGTCATTTCCAGTTTTAAGGAAAGATACTTCTACTGTCTTTGGTGGGGTTTGAGAAATCTAAGTTCATATGGACAGAACTTGGATACCACCACATATCTTCCGGAGACATTATTTTGCATCATCTTATGCATTGCTGGACTGGTTTTCTTTTCGCTTTTGATTGGAAACATGGAGACGTACTTGTCATCAATGACAGTTAGACTTGAAGAATGGAGGATTCGGAAAAGAGATACCGAGGAGTGGATGAGGCATCGCCAGTTACCACCACATTTGCAGGAACGTGTCCGTCGTTTTGTTCAATATAAATGGCTTGCAACAAGAGGAGTTGATGAAGAAGCCATAATGCTTTCGTTACCTTTGGATCTTCGTCGGGAAATTCAACATCACTTGTGTCTTTCTCTTGTGCGGCGTGTATGTGTCTCTGTCCCATTCCCTGATGTGATGCTGCAAATACATAGGAATGCAATACTAAGTGAAAAACATGGTTTATTAATATTTGTACAGGTCCCATTTTTCTCCCAAATGGACGATCAACTTCTTGATGCAATTTGTGAACGTCTTTCGTCATCACTAAGCACTGAAGGCACCTACATATTCCGAGAGGGTGATCCGGTGGATGAAATGTTGTTTATCATCAGAGGGCAATTGGAGAGTTCGACGACCAACGGAGGAAGGTCTGGATTCTTCAATTGCATAAAACTCAGGCCTGGTGACTTTTGCGGAGAGGAATTGCTGACATGGGCCTTAATGCCAAACTCAACCCTCAACCTACCTTCTTCTACTCGAACTGTGAAAGCTCTTTCTGAAGTTGAAGCTTTTTCACTGCAAGCAGAGGATCTTAAATTTGTGGCAAGTCAGTTCAAGCGCCTTCACAGCAAGAAACTTCAGCATGCGTTTAGGTATTATTCCCATCAATGGAGAACATGGGGTTCTTGCTTCATACAAGCTGCTTGGAGACGATATCAGAAAAGAAAGGCAACAAGGGAGTTATCCCTGAAAGAGGGTCTCTACTACCTGTCTTTGCCTGAGACGGAAGAAAGTGAATATTTGGAGGATGATGAAACCGTGGAATCCTCAGGGAAAACGAAAAAGATTCAGAATCTTGGTGCAACTGTCTTGGCATCAAAGTTTGCTGCCAATACAAGGAAAGGGGCACATAAGCTACCAGATCCTGTGCCCCAGTTGTTCAAGCCAGACGAACCTGATTTTTCTTTAGACCATGAACTTTAG 2166 0.4584 MYSIISTPASKFRQFRRLRSRPKTTTATEEEHAFQILWRHQILDPDSDIVAYWNKVFLVTSLLALFVDPLYFFLPTVGGPACLQADPKLSIIVTIIRSFADLFYVLHMLMKFRTAFVAPNSRIFGRGDLVMDSREIATRYLRSDFVIDLAATIPLPQIVIWLVIPASRNARTDHANNTLALFVLIQYVPRLFLIFHLNQRIQKTTGVIAKTPWIGAAYNLILYMLASHVTGATWYLSSIGRQFNCWKTQCQIENKSHTLSCFSSYLDCNSLNAPDRQYWLNITRVITKCDAKSKINVKYKFGMFAEAFLNDVVISSFKERYFYCLWWGLRNLSSYGQNLDTTTYLPETLFCIILCIAGLVFFSLLIGNMETYLSSMTVRLEEWRIRKRDTEEWMRHRQLPPHLQERVRRFVQYKWLATRGVDEEAIMLSLPLDLRREIQHHLCLSLVRRVCVSVPFPDVMLQIHRNAILSEKHGLLIFVQVPFFSQMDDQLLDAICERLSSSLSTEGTYIFREGDPVDEMLFIIRGQLESSTTNGGRSGFFNCIKLRPGDFCGEELLTWALMPNSTLNLPSSTRTVKALSEVEAFSLQAEDLKFVASQFKRLHSKKLQHAFRYYSHQWRTWGSCFIQAAWRRYQKRKATRELSLKEGLYYLSLPETEESEYLEDDETVESSGKTKKIQNLGATVLASKFAANTRKGAHKLPDPVPQLFKPDEPDFSLDHEL 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g02044 721 SUPERFAMILY cAMP-binding domain-like 382 451 IPR018490 -
Viun5g02044 721 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 26 715 - -
Viun5g02044 721 Gene3D Jelly Rolls 481 601 IPR014710 -
Viun5g02044 721 CDD CAP_ED 483 614 IPR000595 -
Viun5g02044 721 ProSiteProfiles cAMP/cGMP binding motif profile. 483 613 IPR000595 -
Viun5g02044 721 Pfam Cyclic nucleotide-binding domain 506 594 IPR000595 -
Viun5g02044 721 SMART cnmp_10 483 614 IPR000595 -
Viun5g02044 721 Gene3D - 59 373 - -
Viun5g02044 721 SUPERFAMILY cAMP-binding domain-like 478 601 IPR018490 -
Viun5g02044 721 SUPERFAMILY Voltage-gated potassium channels 44 374 - -
Viun5g02044 721 MobiDBLite consensus disorder prediction 695 721 - -
Viun5g02044 721 FunFam Cyclic nucleotide-gated ion channel 1 481 599 - -
Viun5g02044 721 Gene3D Helix hairpin bin 374 443 - -
Viun5g02044 721 Pfam Ion transport protein 52 379 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g02044 Viun-Chr5 24021734 24025244 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g02044 10 720 Ion Channels AT5G14870 64.043 0.0 971
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g02044 K05391 - gmx:100802812 1242.25