Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g02043 ATGTATAGCATAATATCGACGCCGGCGTCTAAGTTCCGCCAGTTCAGGCGACTCCGATCCCGACCGAAGACAACAACAGCGACAGAGGAGGAGCACGCGTTTCAAATCCTATGGCGGCACCAGATACTGGACCCCGACAGCGACATCGTGGCGTATTGGAACAAGGTGTTTCTCGTGACAAGCCTCCTCGCCCTCTTCGTCGACCCTCTCTACTTCTTCCTCCCCACAGTGGGTGGCCCCGCCTGCTTGCAGGCCGACCCCAAACTCAGCATCATCGTCACCATCATCCGCTCCTTCGCTGACCTCTTCTACGTCCTCCACATGCTCATGAAGTTCCGTACCGCCTTCGTCGCCCCCAACTCTAGAATCTTCGGCCGCGGTGACCTCGTCATGGACTCCCGCGAAATCGCCACGCGTTACCTCAGATCCGATTTTGTCATTGACCTCGCCGCCACCATCCCTCTCCCCCAGATTGTGATTTGGTTGGTGATTCCAGCAAGCAGAAACGCAAGAACTGATCATGCCAACAATACTCTTGCTCTTTTTGTTCTTATTCAATATGTTCCTAGGTTGTTTCTTATCTTTCATTTGAACCAGCGTATTCAGAAAACCACTGGCGTTATTGCCAAGACTCCCTGGATTGGAGCCGCATACAATCTTATTCTCTACATGCTAGCCAGCCATGTTACAGGAGCGACTTGGTATCTATCGTCAATAGGGAGGCAGTTTAATTGCTGGAAAACGCAGTGCCAAATAGAGAACAAATCACATACCCTCTCTTGCTTTTCAAGTTATCTTGATTGTAATAGTTTGAACGCCCCTGATAGGCAATACTGGCTAAACATCACCCGTGTAATCACCAAATGTGACGCGAAGAGTAAAATCAACGTCAAATATAAATTTGGGATGTTCGCAGAGGCTTTCCTGAACGATGTTGTCATTTCCAGTTTTAAGGAAAGATACTTCTACTGTCTTTGGTGGGGTTTGAGAAATCTAAGTTCATATGGACAGAACTTGGATACCACCACATATCTTCCGGAGACATTATTTTGCATCATCTTATGCATTGCTGGACTGGTTTTCTTTTCGCTTTTGATTGGAAACATGGAGACGTACTTGTCATCAATGACAGTTAGACTTGAAGAATGGAGGATTCGGAAAAGAGATACCGAGGAGTGGATGAGGCATCGCCAGTTACCACCACATTTGCAGGAACGTGTCCGTCGTTTTGTTCAATATAAATGGCTTGCAACAAGAGGAGTTGATGAAGAAGCCATAATGCTTTCGTTACCTTTGGATCTTCGTCGGGAAATTCAACATCACTTGTGTCTTTCTCTTGTGCGGCGTGTCCCATTTTTCTCCCAAATGGACGATCAACTTCTTGATGCAATTTGTGAACGTCTTTCGTCATCACTAAGCACTGAAGGCACCTACATATTCCGAGAGGGTGATCCGGTGGATGAAATGTTGTTTATCATCAGAGGGCAATTGGAGAGTTCGACGACCAACGGAGGAAGGTCTGGATTCTTCAATTGCATAAAACTCAGGCCTGGTGACTTTTGCGGAGAGGAATTGCTGACATGGGCCTTAATGCCAAACTCAACCCTCAACCTACCTTCTTCTACTCGAACTGTGAAAGCTCTTTCTGAAGTTGAAGCTTTTTCACTGCAAGCAGAGGATCTTAAATTTGTGGCAAGTCAGTTCAAGCGCCTTCACAGCAAGAAACTTCAGCATGCGTTTAGGTATTATTCCCATCAATGGAGAACATGGGGTTCTTGCTTCATACAAGCTGCTTGGAGACGATATCAGAAAAGAAAGGCAACAAGGGAGTTATCCCTGAAAGAGGGTCTCTACTACCTGTCTTTGCCTGAGACGGAAGAAAGTGAATATTTGGAGGATGATGAAACCGTGGAATCCTCAGGGAAAACGAAAAAGATTCAGAATCTTGGTGCAACTGTCTTGGCATCAAAGTTTGCTGCCAATACAAGGAAAGGGGCACATAAGCTACCAGATCCTGTGCCCCAGTTGTTCAAGCCAGACGAACCTGATTTTTCTTTAGACCATGAACTTTAG 2073 0.4631 MYSIISTPASKFRQFRRLRSRPKTTTATEEEHAFQILWRHQILDPDSDIVAYWNKVFLVTSLLALFVDPLYFFLPTVGGPACLQADPKLSIIVTIIRSFADLFYVLHMLMKFRTAFVAPNSRIFGRGDLVMDSREIATRYLRSDFVIDLAATIPLPQIVIWLVIPASRNARTDHANNTLALFVLIQYVPRLFLIFHLNQRIQKTTGVIAKTPWIGAAYNLILYMLASHVTGATWYLSSIGRQFNCWKTQCQIENKSHTLSCFSSYLDCNSLNAPDRQYWLNITRVITKCDAKSKINVKYKFGMFAEAFLNDVVISSFKERYFYCLWWGLRNLSSYGQNLDTTTYLPETLFCIILCIAGLVFFSLLIGNMETYLSSMTVRLEEWRIRKRDTEEWMRHRQLPPHLQERVRRFVQYKWLATRGVDEEAIMLSLPLDLRREIQHHLCLSLVRRVPFFSQMDDQLLDAICERLSSSLSTEGTYIFREGDPVDEMLFIIRGQLESSTTNGGRSGFFNCIKLRPGDFCGEELLTWALMPNSTLNLPSSTRTVKALSEVEAFSLQAEDLKFVASQFKRLHSKKLQHAFRYYSHQWRTWGSCFIQAAWRRYQKRKATRELSLKEGLYYLSLPETEESEYLEDDETVESSGKTKKIQNLGATVLASKFAANTRKGAHKLPDPVPQLFKPDEPDFSLDHEL 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g02043 690 CDD CAP_ED 452 583 IPR000595 -
Viun5g02043 690 Pfam Ion transport protein 52 379 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Viun5g02043 690 Gene3D Jelly Rolls 450 570 IPR014710 -
Viun5g02043 690 SMART cnmp_10 452 583 IPR000595 -
Viun5g02043 690 FunFam Cyclic nucleotide-gated ion channel 1 450 568 - -
Viun5g02043 690 Gene3D Helix hairpin bin 374 443 - -
Viun5g02043 690 ProSiteProfiles cAMP/cGMP binding motif profile. 452 582 IPR000595 -
Viun5g02043 690 SUPERFAMILY Voltage-gated potassium channels 44 374 - -
Viun5g02043 690 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 26 684 - -
Viun5g02043 690 Gene3D - 59 373 - -
Viun5g02043 690 SUPERFAMILY cAMP-binding domain-like 382 577 IPR018490 -
Viun5g02043 690 Pfam Cyclic nucleotide-binding domain 475 563 IPR000595 -
Viun5g02043 690 MobiDBLite consensus disorder prediction 664 690 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g02043 Viun-Chr5 24021734 24025244 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g02043 10 689 Ion Channels AT5G14870 66.856 0.0 986
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g02043 K05391 - gmx:100802812 1258.43