Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g02038 ATGGCTGCAACATCAGTGCCTTCACACATGAAAGCTTGGACTTACTCGGAGTATGGGAAATCCGGCGAAGTTCTCAAGTTTAACCACAGCGTGGCTTTACCTCCGGTGAAGGAAGATCAGGTCCTCATCAAGGTCGCTGCTGCTTCCATTAACCCCATTGATTACAAGAGAATGGAAGGTCATTTCAAGAACTCCGATTCCCCTTTACCTACTGTTCCGGGGTTTGATGTTGCTGGAGTGGTGGTGAAAGTGGGAAGTGAAGTGAAGAAATTCAAGGTTGGGGATGAAGTTTATGGTGATATAAATTTGAAAGCTTTGGAATATCCGAAAGTGATTGGTTCTTTGGCTGAGTACACTGCTGCAGAAGAGAGATTATTGGCTCACAAGCCACAGAGTCTAAGCTTTGTTGAGGCTGCTAGCCTTCCTTTAACACTTGAGACAGCTTATGAAGGCCTTGAACGAACTGGGTTTTCTGCAGGGAAATCTATCCTTGTGCTTGGAGGTGCTGGTGGAGTTGGAACCCATGTTATTCAGCTTGCAAAGCATGTATATGGAGCATCCAAGGTAGCAGCCACAGCTAGCAGTACGAAACTTGAATTATTGAGCAATTTGGGGGCTGACTTGCCAATTGATTACACTAAAGAGAATTTTGAAGACTTGTCTGAAAAGTTTGATGTGGTGTATGATACAGTAGGGCAAACTGAACAGGCATTCAAGGCTTTGAAAGAAGGAGGCAAAGTTGTGACCATAGTACCACCTGGGTTTCCTCCAGCTATATTGTTCATTCTGAGTACTGATGGGGGTATTTTAGAGAAACTAAACCCCTATTTTGAGAGTGGTAAGTTGAAGCCAATACTTGACCCCAAGAGCCCCTTTCCATTTTCTCAGACGGTTGAAGCATTTGCCCATCTCGAAACAAACAGGGCAACGGGAAAAGTTGTTATCTTTCCCATTCCATGA 960 0.4437 MAATSVPSHMKAWTYSEYGKSGEVLKFNHSVALPPVKEDQVLIKVAAASINPIDYKRMEGHFKNSDSPLPTVPGFDVAGVVVKVGSEVKKFKVGDEVYGDINLKALEYPKVIGSLAEYTAAEERLLAHKPQSLSFVEAASLPLTLETAYEGLERTGFSAGKSILVLGGAGGVGTHVIQLAKHVYGASKVAATASSTKLELLSNLGADLPIDYTKENFEDLSEKFDVVYDTVGQTEQAFKALKEGGKVVTIVPPGFPPAILFILSTDGGILEKLNPYFESGKLKPILDPKSPFPFSQTVEAFAHLETNRATGKVVIFPIP 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g02038 319 PANTHER NADPH-DEPENDENT ALKENAL/ONE OXIDOREDUCTASE, CHLOROPLASTIC 2 319 IPR044626 GO:0016628
Viun5g02038 319 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 133 285 IPR036291 -
Viun5g02038 319 Pfam Alcohol dehydrogenase GroES-like domain 39 101 IPR013154 -
Viun5g02038 319 Gene3D - 17 315 - -
Viun5g02038 319 Gene3D - 152 266 - -
Viun5g02038 319 SUPERFAMILY GroES-like 6 167 IPR011032 -
Viun5g02038 319 ProSitePatterns Quinone oxidoreductase / zeta-crystallin signature. 160 181 IPR002364 GO:0008270|GO:0016491
Viun5g02038 319 SMART PKS_ER_names_mod 22 315 IPR020843 GO:0016491
Viun5g02038 319 CDD MDR_like_2 10 315 - -
Viun5g02038 319 Pfam Zinc-binding dehydrogenase 204 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g02038 Viun-Chr5 23674310 23677753 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g02038 29 231 Monolignol Biosynthesis Gene Families AT3G19450 25.322 8.74e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g02038 K18980 - gmx:100817947 555.058