Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g02037 ATGGATTGCAGAATGGAGAGTGCAGAAACTCACAGGAATAAGTGTGCAGCATGCTTCAGACAGTTCAACAAACTGGAGCACCTTGTGGAGCACATGAGGATCTCATACCATTCGGTTCATGAACCAACCTGTGGCATTTGCAGGAAACACTGCAGGTCATTTGAGTCTCTAAGGGAACATCTTATAGGTCCATTGCCAAAGCAGGAATGCAGAGATATGTTTGCCTATAGAGGGTGCAAGTTTTGCTTGAAAGTCTTTGACAGCCCTAATTCTCGCAGGATTCACCAAGAAAAATGCCAACACTCTGGGACAAATGCTGGAATAATTGGTCGCTTTTCAAACTTGGGACTTCGTGATAATTTGGCCATTAGTGGTGGAGTAAGAGGACCACAAGTAGTTGCATTAGCATGTAAAATGGTTGGTGGTGGCAGTGATGGCTCACTAGATCTCTGTGGAAGAGTGTGCTTAATCGATGAGCATGAGAACATAATCTTCCATTCTTATGTGAAGCCACCAATTCCTGTCACAAACTACAGGTATGAGACCACAGGCATTAGACCAGAATACCTGAGGGATGCAATGCCAATGAAACAAGTTCAAAGGAGGATTCAAGACTTTCTTTGCAACGGTGAACCTATGTGGACAATTCGAGCAAGAGGAGGAAGAGCAAGGATTCTTGTGGGCCATGGTTTGGATCATGACCTTGAATGTCTGCAAATAGAATATCGAACAGAAAAGATAAGGGACACTGCAAAATACCCTCCTCTGATGAAAACGAGCAAACTCAGCAACTCGCTCAAGTACTTAACACAAACATATCTTGGGTATGACATTCAAGTTGGAATTCAGGATCCTTATGATGACTGTGTGGCAACTATGAGGCTCTACATGAGAATGAGATCCCAAATACACAGAACACAGGATTACCCTTTGGTGTCTGACCCACAGAACAGGAACAATTTTGCTTCGTGGAGGCAAAGTGAGCTTGAAAGAATGACTCCTGAACAAATGCTGGAAATATCAAGATCTGACTACTATTGCTGGTGCTTGGATTCCTTGTATCCCTGA 1068 0.4345 MDCRMESAETHRNKCAACFRQFNKLEHLVEHMRISYHSVHEPTCGICRKHCRSFESLREHLIGPLPKQECRDMFAYRGCKFCLKVFDSPNSRRIHQEKCQHSGTNAGIIGRFSNLGLRDNLAISGGVRGPQVVALACKMVGGGSDGSLDLCGRVCLIDEHENIIFHSYVKPPIPVTNYRYETTGIRPEYLRDAMPMKQVQRRIQDFLCNGEPMWTIRARGGRARILVGHGLDHDLECLQIEYRTEKIRDTAKYPPLMKTSKLSNSLKYLTQTYLGYDIQVGIQDPYDDCVATMRLYMRMRSQIHRTQDYPLVSDPQNRNNFASWRQSELERMTPEQMLEISRSDYYCWCLDSLYP 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g02037 355 SMART c2h2final6 13 37 IPR013087 -
Viun5g02037 355 SMART c2h2final6 42 62 IPR013087 -
Viun5g02037 355 SMART c2h2final6 77 101 IPR013087 -
Viun5g02037 355 Gene3D - 129 314 IPR036397 GO:0003676
Viun5g02037 355 SMART exoiiiendus 131 305 IPR013520 -
Viun5g02037 355 ProSitePatterns Zinc finger C2H2 type domain signature. 15 37 IPR013087 -
Viun5g02037 355 CDD REX4_like 133 296 IPR037431 GO:0006364|GO:0008408
Viun5g02037 355 SUPERFAMILY Ribonuclease H-like 147 301 IPR012337 -
Viun5g02037 355 ProSiteProfiles Zinc finger C2H2 type domain profile. 13 42 IPR013087 -
Viun5g02037 355 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 18 351 IPR047021 GO:0004527
Viun5g02037 355 ProSitePatterns Zinc finger C2H2 type domain signature. 79 101 IPR013087 -
Viun5g02037 355 FunFam RNA exonuclease 4 128 315 - -
Viun5g02037 355 Pfam Exonuclease 159 295 IPR013520 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g02037 Viun-Chr5 23600740 23602981 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g02037 1 353 C2H2 Transcription Factor Family AT3G27970 74.157 0.0 572
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g02037 - - gmx:100813973 698.738