Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g02035 ATGCTTCCACTGCAATTTGGCACGCGCCCTCACTACCCTCCTTCGCTGTTCCTGAGCAGCTCCAACGCTTGTTCCTCCTCTCGCATCCTCTACAGCAACAGAAACAACCAGGTGTACCTTGTTCGCTCCAACGTTGGAACCCTCAACCTTAGGGTTTTCGCTGCGTCCGGCAACTCCTCATACAAGATGAACCTCAACGAGTACCTTGTCACTCTCGAGAAGCCCCTCGGCATTCGATTCGCGCTAACCGCTGATGGCAAAATCATCGTCCACTCTCTCACCAAAGGGGGTAATGCAGAGAGATCCAGGATAATTATGGTGGGTGATACTTTGAAGAAAGCTGGCGATTCGTCTCAGAACACTCTCGTTGAGATTAAAGACGTTGGAAATACGCAGAAGGTGCTAAATGAGCAAACAAATTCTTTTAGTTTGGTACTTGAGAGGCCCACATCTCCTTTTCCTATTCAACTTCTGCACAAGATGAATGATTTTGAGACAGTGTTTAATAGAGGGCGAGTTCCTATTGTCACATGGAACAAGACCCTATTGGCATCAAATTTACAATCATCTAGTGAGAGCAGCACGAATTCGGGATTTTTGATGTTCAACTCAAAGTTTCTCAAACCAAATGCAAACAAGTTATTGGGCAACCAAAATCAACGTACCATCACCCATGGTGAGAGAAACTTCTTTACTGAACACACACCACAAATTGCTTGTGTTTTTACTGAAGAAGTGTGTGGAGATGGAGATTGGGGTCATGGAAGTTTCCCACTTGAGGAGTATATTCAGGCTCTAGATCGTTCCAAGGATGAGATGTATTATAACCACTCTCTTGGTATGCGTTATAGTAAGATTACAGAGCAAATTTATGTGGGATCCTGTATACAAACAGAAGATGATGTAGAGACCTTGTCAAAAGTTGAGGGAATTACTGCTGTTCTGAACTTCCAAAGTGGAACTGAAGCCGAAAATTGGGGAATCAATGCAAAATCAATCAATGAATCTTGTCAAAGGAATAATATTCTCATGATCAACTATCCTATTCGGGAGGGAGATTCTTATGATATGAGGAAAAAACTCCCATTTTGTGTGGGGCTTCTACTACGTTTGCTAAGGAAGAATCTTCGTGTTTTTGTTACTTGCACTTCTGGATTTGATCAGTCTCCTGCTTGTGTGATTGCCTACCTACATTGGATGACGGATGTTTCCCTTCATGCAGCGCATACTTGGGTCACTGGGATGCACAATTGCAGACCTGACAGGCCGGCAATTGCATGGGCTACTTGGGATCTTATAGCCATGGTTGAAAATGGCAAACATGATGGACCTCCTACACATGCTGTCACATTTGTGTGGAATGGTCATGAGGGTGAGGATGTAACTTTGGTTGGAGACTTTACCGGAAATTGGAAAGAACCACTAAAGGCAAAGTTCCAAGGTGGATCAAGACATGAAGTAGAAGTTAAACTTCCACAAGGAAAGTATTACTACAAGTTCATTGTAAATGGACAATGGAAACATTCAACTGCTTCACCAGCAGAAAGGGATGACAGGGGAAACGTTAACAATATAATCGTGATTGGTGAAACTGCCAATGTTCGGCCTTCTGTTCAGCACCAGCTGAAAGATGCTAACGTTGTCAAGGTGATTGAAAGGCCTTTGAATGAAAAGGAGCGGTTTATGCTGGCAAAAGCAGCTCGTTGTATTGCTTTTTCTATCAGTCCGATCACATTGGCCCCCAAATAG 1749 0.4345 MLPLQFGTRPHYPPSLFLSSSNACSSSRILYSNRNNQVYLVRSNVGTLNLRVFAASGNSSYKMNLNEYLVTLEKPLGIRFALTADGKIIVHSLTKGGNAERSRIIMVGDTLKKAGDSSQNTLVEIKDVGNTQKVLNEQTNSFSLVLERPTSPFPIQLLHKMNDFETVFNRGRVPIVTWNKTLLASNLQSSSESSTNSGFLMFNSKFLKPNANKLLGNQNQRTITHGERNFFTEHTPQIACVFTEEVCGDGDWGHGSFPLEEYIQALDRSKDEMYYNHSLGMRYSKITEQIYVGSCIQTEDDVETLSKVEGITAVLNFQSGTEAENWGINAKSINESCQRNNILMINYPIREGDSYDMRKKLPFCVGLLLRLLRKNLRVFVTCTSGFDQSPACVIAYLHWMTDVSLHAAHTWVTGMHNCRPDRPAIAWATWDLIAMVENGKHDGPPTHAVTFVWNGHEGEDVTLVGDFTGNWKEPLKAKFQGGSRHEVEVKLPQGKYYYKFIVNGQWKHSTASPAERDDRGNVNNIIVIGETANVRPSVQHQLKDANVVKVIERPLNEKERFMLAKAARCIAFSISPITLAPK 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g02035 582 Pfam Glycogen recognition site of AMP-activated protein kinase 449 531 IPR032640 -
Viun5g02035 582 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 272 420 IPR029021 -
Viun5g02035 582 FunFam Phosphoglucan phosphatase LSF1 chloroplastic 275 441 - -
Viun5g02035 582 Gene3D Immunoglobulins 436 532 IPR013783 -
Viun5g02035 582 SUPERFAMILY E set domains 446 529 IPR014756 -
Viun5g02035 582 PANTHER PHOSPHOGLUCAN PHOSPHATASE LSF1, CHLOROPLASTIC 51 580 - -
Viun5g02035 582 FunFam Phosphoglucan phosphatase LSF1, chloroplastic 436 532 - -
Viun5g02035 582 CDD E_set_AMPKbeta_like_N 449 528 - -
Viun5g02035 582 SUPERFAMILY PDZ domain-like 72 162 IPR036034 GO:0005515
Viun5g02035 582 Gene3D Protein tyrosine phosphatase superfamily 275 546 IPR029021 -
Viun5g02035 582 CDD DSP_laforin-like 281 427 IPR045204 GO:0019203
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g02035 Viun-Chr5 23562101 23573781 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g02035 134 582 Protein tyrosine phosphatase (PTP) family AT3G01510 68.151 0.0 649
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g02035 - - gmx:100814503 1057.74