Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g02027 ATGGATAAAAAACAGTGCAATACGTCTCAAGATCCTGAAGTGAGAAAAGGGCCATGGACAATGGAAGAAGATTTGATCTTGATCAACTATATTTCGAACCATGGGGAAGGTGTTTGGAACTCTTTGGCCAAAGCTGCTGGTCTTAAACGTACTGGAAAGAGTTGCCGACTTAGGTGGCTAAACTACCTCCGTCCTGATGTTAGAAGAGGGAATATTACACCCGAGGAACAACTTTTGATCATGGAGCTTCACGCAAAGTGGGGAAACAGGTGGTCAAAAATTGCCAAGCATCTACCAGGAAGGACTGATAATGAGATAAAAAACTACTGGAGGACCAGGATTCAGAAGCACATCAAGCAAGCCGAGAACTTTCAGCAACAGAGTAATTCTAATTCTGAGATAAATGACCATCAAGCTAGCACTAGCCAAGTGTCCACCATGGCTGAGCCCATGGAGACCTACTCTTCACCCTGTTACCAAGGAATGTTAGAGCCATTTTCTACTCAGTTTCCCAATATTCCTGATCAATCCAGTTGTTGTACCAATGACAACAACAACAATTATTGGAGCATGGAGGATATCTGGTCAATGCAGTTACTCAACGGGGATTAA 612 0.4314 MDKKQCNTSQDPEVRKGPWTMEEDLILINYISNHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVRRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNYWRTRIQKHIKQAENFQQQSNSNSEINDHQASTSQVSTMAEPMETYSSPCYQGMLEPFSTQFPNIPDQSSCCTNDNNNNYWSMEDIWSMQLLNGD 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g02027 203 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Viun5g02027 203 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 11 142 IPR044676 GO:0003700|GO:0006355|GO:0043565
Viun5g02027 203 CDD SANT 73 112 IPR001005 -
Viun5g02027 203 Gene3D - 73 145 - -
Viun5g02027 203 Pfam Myb-like DNA-binding domain 69 112 IPR001005 -
Viun5g02027 203 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Viun5g02027 203 SMART sant 68 116 IPR001005 -
Viun5g02027 203 SMART sant 15 65 IPR001005 -
Viun5g02027 203 SUPERFAMILY Homeodomain-like 13 110 IPR009057 -
Viun5g02027 203 Gene3D - 16 68 - -
Viun5g02027 203 CDD SANT 18 63 IPR001005 -
Viun5g02027 203 FunFam Myb-related protein 305 73 144 - -
Viun5g02027 203 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Viun5g02027 203 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Viun5g02027 203 FunFam Myb transcription factor 16 68 - -
Viun5g02027 203 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g02027 Viun-Chr5 23122690 23126217 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g02027 4 203 MYB Transcription Factor Family AT3G01530 59.314 1.51e-77 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Viun5g02027 Myb_DNA-binding 1.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g02027 K09422 - gmx:778048 400.593