Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g02019 ATGGAGTTTAGTCCAAGCTTCCCTGAGAAAATGCACTACCTTTCTGGGATTTTCCCTGAAATCAAATCAGAGATTCATGTGTCAGAAGAGAACAGCAGCTTCATGTACCAAAACAATTTCAACCATTTTCAGCAGCACCATCCCCTGAACGAGCCAAACCATGGTCACCCTGAAAGTTTTTTCGCAGAGGGTTCTTCCTCCATCATTGCCCCATTATTCTCTTTGTCCTCAGCAGCCCCTTCTTCAGGTGGCTACAAACCCACTTACCCCAATGAGTGCCTGAAGGGAGGGTATGGCAACCCCTACTACCCCATGGCCTATGCACCAAACAATGTTGAATCCATGCATGGTCACCCCAACAAGGTCATCTGGGACTTTTCCCAGAAGGCTCGCCTTCACTCTGGTCCAAGTGCAACTTCAGATCCTCAGGTGCAGAGGAAGACCAATGGCCAAATTCAGCAGAGGATGACAAACATAATCAAAGGCCAGTGGAGTGCTGAAGAGGACAGCGTCCTTGTCCAATTGGTGAAACGCTTCGGGATCAAAAAATGGTCGCACATCGCCAGGTTGCTCAATGGCAGGGTTGGGAAACAGTGCAGAGAGAGGTGGCACAATCATCTCCGGCCAAACATTAGGAAGGAGTCATGGAGCGAAGAGGAGGACAAAATCCTGATCGAAGCTCACAAGGAACTCGGGAACAAATGGGCAGAGATTGCAAGGAGAATGCCGGGAAGGACCGAAAACACCATCAAGAACCACTGGAACGCCACCAAGCGCCGCCAGAAGGCAAAGAGGCAGAGGAACAAGCGCAGGAACTCCAAGGGTACACCCACACTTCTCGAGAGCTACATAAGGAAAGTCACTGCGGCGGAAGACTCTGAGAAGGATTTGAAGAACTCCCTCAGCAAGATGAACCTCAATGACACCACCAATACGGGCCTCTTTCGGGTTCGCTACGAGAGCTCCGAAGGTGACTTCAGCTCCGAGGAGGAGGAGCTTGGGTGGAGCCTGCAGCACCACGTGCCATGTGCCGCCGCTGATGGTGGTTATGTGCCGGTGATGGTGAACGCTGGGGAAGAGAGCACGATTGACTACGAGGTTGCCATGCAGATGGTACCGGAGGTCCAGATGAGGAAGGAGATGGATCTCATGGAGATGATCTATAGAAAAGGTTAA 1176 0.5128 MEFSPSFPEKMHYLSGIFPEIKSEIHVSEENSSFMYQNNFNHFQQHHPLNEPNHGHPESFFAEGSSSIIAPLFSLSSAAPSSGGYKPTYPNECLKGGYGNPYYPMAYAPNNVESMHGHPNKVIWDFSQKARLHSGPSATSDPQVQRKTNGQIQQRMTNIIKGQWSAEEDSVLVQLVKRFGIKKWSHIARLLNGRVGKQCRERWHNHLRPNIRKESWSEEEDKILIEAHKELGNKWAEIARRMPGRTENTIKNHWNATKRRQKAKRQRNKRRNSKGTPTLLESYIRKVTAAEDSEKDLKNSLSKMNLNDTTNTGLFRVRYESSEGDFSSEEEELGWSLQHHVPCAAADGGYVPVMVNAGEESTIDYEVAMQMVPEVQMRKEMDLMEMIYRKG 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g02019 391 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 156 207 IPR017930 -
Viun5g02019 391 Pfam Myb-like DNA-binding domain 164 222 - -
Viun5g02019 391 CDD SANT 215 258 IPR001005 -
Viun5g02019 391 Gene3D - 160 212 - -
Viun5g02019 391 ProSiteProfiles Myb-like domain profile. 208 258 IPR001005 -
Viun5g02019 391 SMART sant 160 209 IPR001005 -
Viun5g02019 391 SMART sant 212 260 IPR001005 -
Viun5g02019 391 FunFam Transcriptional activator Myb isoform A 160 213 - -
Viun5g02019 391 MobiDBLite consensus disorder prediction 256 272 - -
Viun5g02019 391 Gene3D - 214 278 - -
Viun5g02019 391 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 208 262 IPR017930 -
Viun5g02019 391 SUPERFAMILY Homeodomain-like 158 254 IPR009057 -
Viun5g02019 391 CDD SANT 164 207 IPR001005 -
Viun5g02019 391 ProSiteProfiles Myb-like domain profile. 156 207 IPR001005 -
Viun5g02019 391 PANTHER MYB PROTEIN-RELATED 140 273 - -
Viun5g02019 391 MobiDBLite consensus disorder prediction 256 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g02019 Viun-Chr5 22784419 22789204 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g02019 153 287 MYB Transcription Factor Family AT4G18770 65.185 8.44e-62 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Viun5g02019 Myb_DNA-bind_6 4.8e-18 CL0123